FMO06465.5prime Sequence
1153 bp (1027 high quality bases) assembled on 2008-09-15
> FMO06465.5prime
CAGTCGACATGATGAGGCCCCAATTAGCGGCCATAGCCACTGTCATGGTG
CTGGCTGCGATCTGCGGTTTTGGCACTGGTTCCGTGCTGGAAGTACCCGG
AGTCACCCAGGCACCACCACTCCCACCTCGTAACCTCCGAAACAACCAAA
CGCGGTCGCGCATTCCCAACAACTTCCGAAGCATTGCGACCCCACCAATT
GCTCCCAGATGCGACTACAAGGAGCTGATGACCAATCTGCACGATCGCGT
TGGCATCTTGGTGACCTTGGACGAGGACCAGCGCCACCGGCTGGAAGTCA
TCGATAAGAAATTGGATCAGCTGGTGGAAAGCAGTTCGGCCCGCATGGAA
TCGATGAAGGCCCAGCAATTGGACTTCCTGCACAGACTGGACAGTTTTGA
GCACATCCAGCGGCTTTCGAGGAACACTCTAGATGAGCTTAAAGATATCT
CGCGCACTGTTCGTGACGTTTCCCAGGAACAGTATCCCAGCTCGGGAATA
GGTACATTTAATGAATCCAACTTGAATTTATCAAGTCGTCTGGATGCCTT
GGCCACGCTTTTGGCTTCTACTGCTCTCAGTGTCAGATCTGTGCAGGTTG
AAGTGGCCAATCTTTCACGGGCCATTAGGCGCCAAAGCCGTTTGATCCAG
GGTAAGGGATTGAGGTCGACACCAGGTCAGCAGCCAATCTTCTACGGTCC
AAGTGGATTAAATGGACCAACAGCTACACGGCAGTTGCCTAGTAGTTGCT
CCTATTCCTTCCTTTCTAACCACGGAATTCTAAAAGTACAGCTCACACCC
GAATCGGAATCCTTCTACGTATCCTGCGATGAGGATTGGACTGTTATTTT
GAGCCGCACCTCCGATGATGTGAACTTCGAACGCGGCTGGCTGGATTATC
GCGATGGCTTTGGCATTTGGCTGGGGACTTCTTTATGGTCTCACAAACTG
CATGCCCTCACTTCATCGGCCTTGCACGAACTGCGAATGTGATGGAAGAA
CTTCTCCGGGCAACGTGGCGTATGCGGGATAATTCGGTTGTTTGCAATGG
CAGCGCGAAAGGACCTTATATCCACTTCGTCCTTGCCTGGCAAATTCCAG
AATATTGGCCTCCCTTCAACCTGGAAAATCCATTGTCCCATCATGCTGGA
ACT
FMO06465.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10359-RG | 1684 | CG10359-RG | 128..1267 | 6..1150 | 5120 | 97.3 | Plus |
| CG10359-RE | 1762 | CG10359-RE | 644..1345 | 444..1150 | 2930 | 95.7 | Plus |
| CG10359-RE | 1762 | CG10359-RE | 128..566 | 6..444 | 2195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3614307..3614715 | 625..1031 | 1725 | 98.1 | Plus |
| 3L | 28110227 | 3L | 3614068..3614254 | 443..629 | 935 | 100 | Plus |
| 3L | 28110227 | 3L | 3612319..3612492 | 6..179 | 870 | 100 | Plus |
| 3L | 28110227 | 3L | 3613749..3613882 | 311..444 | 670 | 100 | Plus |
| 3L | 28110227 | 3L | 3613075..3613205 | 180..310 | 655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:52:44 has no hits.
FMO06465.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:07:41 Download gff for
FMO06465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10359-RG | 124..1155 | 1..1031 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:56:24 Download gff for
FMO06465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10359-RG | 122..1153 | 1..1031 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:43:07 Download gff for
FMO06465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10359-RG | 124..1155 | 1..1031 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:43:07 Download gff for
FMO06465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3613749..3613882 | 311..444 | 100 | -> | Plus |
| 3L | 3614070..3614253 | 445..628 | 100 | -> | Plus |
| 3L | 3614311..3614715 | 629..1031 | 98 | == | Plus |
| 3L | 3612315..3612492 | 1..179 | 98 | -> | Plus |
| 3L | 3613075..3613205 | 180..310 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:07:41 Download gff for
FMO06465.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3613749..3613882 | 311..444 | 100 | -> | Plus |
| arm_3L | 3612315..3612492 | 1..179 | 98 | -> | Plus |
| arm_3L | 3613075..3613205 | 180..310 | 100 | -> | Plus |
| arm_3L | 3614070..3614253 | 445..628 | 100 | -> | Plus |
| arm_3L | 3614311..3614715 | 629..1031 | 98 | == | Plus |
