FMO06466.5prime Sequence
667 bp (667 high quality bases) assembled on 2008-09-15
> FMO06466.5prime
CAGTCGACATGGAGGAGGAGCAACAATTTACGCCGGAACCGAAAAACTCC
GCGCAAAAAGGCGCAGAAAAGCCTGCAAGGATTCCGAGAGAGGTGAAAGT
TAAGCTGCAAAGGCAACTAAACAGACTGGGCTACTCACAGCAAATCCTGC
TCGAAGCAGCCAAGCAGCAAAATCAAAATAATTCGAATGGCATTCTCCAG
TATGTGGCCGACATGATTGGCAAGGGCGAGGAAATGGTGAAAAACTGCGA
CTCCGTTAGCTTAAACAACATTAACCAGTGGCTGGAGCTCATGAAAAGTT
CGCAACTCGCTGAACTCTGCGAATTCGAAGCAGCCGTCGTTGTGAACTCC
ATAATCCAAAATGAGACAAAGCCATCGCCAACGGAACTGAACGGCATTGA
CTTGAATGAGGCCTACAAGTTTCTGGAAAACGCTTTGATGGGCCAGCCGC
AAAAGAAGATGAGCGATGCGACCAAAGAATTTTTGTCCAAGGAAATTGAG
CTGCTCATAGAGAAGGCAAACACCGACGAATCCGACGATGTGGCACGCAG
CATGGGGCAGCGTTTATTTTGACCACCAGTTTTTGGATTACATGGAACAG
CGGCAAAAGTGCAGTTTGGATCCACTATTCCTGGACGAGAAGCTAACGGC
AAGCTTTTCTAGACCAT
FMO06466.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6685-RB | 1534 | CG6685-RB | 24..662 | 9..648 | 3175 | 99.8 | Plus |
| CG6685-RA | 929 | CG6685-RA | 24..662 | 9..648 | 3175 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9967834..9968041 | 406..199 | 1040 | 100 | Minus |
| 3L | 28110227 | 3L | 9968105..9968294 | 198..9 | 950 | 100 | Minus |
| 3L | 28110227 | 3L | 9967475..9967623 | 648..499 | 700 | 99.3 | Minus |
| 3L | 28110227 | 3L | 9967687..9967780 | 500..407 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:20:55 has no hits.
FMO06466.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:00 Download gff for
FMO06466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6685-RA | 16..662 | 1..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:56:25 Download gff for
FMO06466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6685-RA | 1..646 | 2..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:59 Download gff for
FMO06466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6685-RA | 16..662 | 1..648 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:59 Download gff for
FMO06466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9967475..9967621 | 501..648 | 99 | <- | Minus |
| 3L | 9967687..9967780 | 407..500 | 100 | <- | Minus |
| 3L | 9967834..9968041 | 199..406 | 100 | <- | Minus |
| 3L | 9968105..9968302 | 1..198 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:00 Download gff for
FMO06466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9960575..9960721 | 501..648 | 99 | <- | Minus |
| arm_3L | 9960787..9960880 | 407..500 | 100 | <- | Minus |
| arm_3L | 9960934..9961141 | 199..406 | 100 | <- | Minus |
| arm_3L | 9961205..9961402 | 1..198 | 97 | | Minus |
