FMO06469.5prime Sequence
1108 bp (851 high quality bases) assembled on 2008-09-15
> FMO06469.5prime
CAGTCGACATGAATGTGGAGCAGGTGTTGCTGATCAGTCTGGCATTGATT
TCCCTCGCACCGGCGATCCTCTCGATCCGCACCTGCGGGAGCCACGAGGT
CTGCGTTAGCAAGAAGAAGTGCGACGAGTCGGATGATTCCGGCAAGGGGA
AGCTGGTCAAGCGCATATTGGACAACAGCTGCGGGCGCGACTTGGAGTGC
TGCGATAGGGAGCAGTTGGAGAACTTTGAGGCCTATCAGGCCGAGATCGA
GTACCGGAATCAGCGACGAAAAAATATCTGGGCCTCCTCGGATAATCCCC
TTGAAGGCGAACCGAAACCGAACCTCGTCGGCGCCAAGGAGGACGAGCCG
GGCTACAAAAGCTGCGGCGTCAAGCGGGAGTGTGTTCCGCGGCACCTCTG
CTCCACCGGAGTGGTCAACGAGGATGGGAGGTACATCATCAAGCCGCGCA
TTAACGAGGAGAGCAACTTCCGCTGCCGAGTCGTGGAGGAGTGCTGCCCG
TTGGGCGATCAGATAGAGGAGGGTCGCAATCCTATCCAGCGTAACGTAAA
GGATTTTCTGCTGAAGGGATGCGGCTATAGCAACCCGAAGGGGCTCTACT
ACCAGCTGGATGGCTACAACAATGGCGAGTCCGTCTTCGCCGAGTTCCCC
TGGATGGTGGCGCTGATGGACATGGAAGGCAACTTCGTCTGCGGCGGCAC
CCTCATCCACCCGCAGCTGGTGCTGACCAGTGCCCACAACGTGTTCAACC
GGAGTGAGGACTCGCTGCTGGTTCGAGCTGGTGACTGGGACCTTAACAGC
CAGACAGAGCTGCATCCCTACCAGATGCGGGCCATCAGCGAGCTGCATCG
CCACGAGAACTTCACAACCTGACCCTATACATGACATTGCTCTTGTGGTG
CTGGAGCGACTTTCAAGGTGGCCCACACATACAGCCCATTCTGCCTGCCG
CCACCGGAAACCCCCCAAATGAAGACTGAGTTGCAGATTCAAGCTGCTTG
GCAACTGGGTGGGAGGCTCAGGTCATTCGTCCCTCACCATGGGAAATCCT
GCTAAACGCATCGAGCTGACAGGCAGTGGACCAAGAGTCCTGCCACTGCT
GTGCCGCA
FMO06469.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:41:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8738-RA | 1629 | CG8738-RA | 186..1282 | 3..1095 | 4920 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:41:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8696613..8697122 | 3..512 | 2520 | 99.6 | Plus |
| 2R | 25286936 | 2R | 8697647..8698236 | 510..1095 | 2120 | 94.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:41:22 has no hits.
FMO06469.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:05 Download gff for
FMO06469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8738-RA | 185..1296 | 1..1107 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:56:30 Download gff for
FMO06469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8738-RA | 187..1298 | 1..1107 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:57 Download gff for
FMO06469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8738-RA | 185..1296 | 1..1107 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:57 Download gff for
FMO06469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8696612..8697122 | 1..512 | 99 | -> | Plus |
| 2R | 8697650..8698250 | 513..1107 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:05 Download gff for
FMO06469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4584117..4584627 | 1..512 | 99 | -> | Plus |
| arm_2R | 4585155..4585755 | 513..1107 | 94 | | Plus |
