FMO06473.5prime Sequence
1159 bp (1054 high quality bases) assembled on 2008-09-15
> FMO06473.5prime
CAGTCGACATGCACAGTGTTTCGCTTTTGGGCTGTCTTTGCCTCAGCCTT
AGCCTGACTTTGAGTACGGGCAGTCCCCAACTGAATCTGCCCACCCCGCA
GCCCGAGGTCTTCTACAATGGATACACCCCGAATGTGGCCACAACTCCGG
CCCAGCTTCGAGCGGATCGGGATCGCGATCAGCGCTACGGACCACCTTAC
TCCGATGCAGGTGGAGGTGGCAACACCGACGACGGACTCGACGACTTTAG
GTTTGGCCAGACAGATGACGAACGGATGAGGATCGGCTATGGCTATCCCA
CGCCCCGCGTGAACTTTAGTGATTCACCCTTCAGTGGGGCTAGGTTTTCC
AACCACAACTATGGACCCATTTCCAGTACCACCGAACGTAATTACGGCAA
CGACGCCAATCTCAATGGACGCTATTCGGATGTGCCCTACTCCTCCCAAG
GAGAGCGTAACTTCAATCCCAACGATCAGTACAACTACAATAATAATCCG
AATGTGGAATTTGTGGGCATTAACAATCGCAATCGCTTCGAGAATCCCTT
CCTTTCGAACCAGGATCGTTTCAATCTAAATCAGGGCTACTTGGAACGTC
AGCGATATCAGCAGGATCGTCGCTATCAGCAGGAGTTGGAGAAGCTGCGC
ATCCTGCTGGTGGAGTCGGATCAGAAAGGATCACTGGAGTGCACCGCCAA
TGTGGCTGCCCAGTGGAACTTCGAGACGAATGTGAATGATTTTACCCAAA
CGGAAGCGCTAAATGCTCAACAGCGATATGTGGAGTTCCAGCGCATCACT
GCCGAGCAATCCAAGCGGATCAATAAGGATCTCATCTTCGACCGTCGCCT
CTACAGACAACTGATGCTGCAGTCGGAAGTGGGACCCAATGCTCTGCCCC
TAGATGTATTGGATAGGTATAATCGCCTGCTCAATGAGATGCTGTTCCTG
TACAACAGCGCCGAAATCTGTGCCTACCAGCAGCCCTTTCAGTGCGATTT
TCCACTACATACCCAGCTGAGACATCATGCCAGAGCAGGACTGGAATGAG
CTGCAGCCACACTTGGGTGGATACCACAGAAGGCGGACCGCGATGCGGAT
GTTATGAGCAGTGATCGATGGTGATGCAGAAAGTGCTACGTACCATGTCA
CTATGCGCG
FMO06473.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:44:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ance-3-RC | 3426 | CG17988-RC | 284..1442 | 9..1153 | 5245 | 97.7 | Plus |
| Ance-3-RB | 2981 | CG17988-RB | 284..1442 | 9..1153 | 5245 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:44:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13915398..13915905 | 251..758 | 2540 | 100 | Plus |
| 2L | 23513712 | 2L | 13915008..13915250 | 9..251 | 1215 | 100 | Plus |
| 2L | 23513712 | 2L | 13916405..13916564 | 758..917 | 800 | 100 | Plus |
| 2L | 23513712 | 2L | 13916620..13916778 | 917..1071 | 430 | 93.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:44:39 has no hits.
FMO06473.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:32 Download gff for
FMO06473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ance-3-RB | 280..1420 | 1..1135 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:56:37 Download gff for
FMO06473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ance-3-RB | 280..1420 | 1..1135 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:17:41 Download gff for
FMO06473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ance-3-RB | 280..1420 | 1..1135 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:17:41 Download gff for
FMO06473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13916406..13916564 | 759..917 | 100 | -> | Plus |
| 2L | 13915004..13915250 | 1..251 | 98 | -> | Plus |
| 2L | 13915399..13915905 | 252..758 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:32 Download gff for
FMO06473.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13915004..13915250 | 1..251 | 98 | -> | Plus |
| arm_2L | 13915399..13915905 | 252..758 | 100 | -> | Plus |
| arm_2L | 13916406..13916564 | 759..917 | 100 | -> | Plus |
