FMO06474.5prime Sequence
777 bp (697 high quality bases) assembled on 2008-09-15
> FMO06474.5prime
CAGTCGACATGGCGCTTCTCAGAAACGCGTCCCAGAGCTTCTTGGGCAGT
TTCCGGCGCTTTGCCAGCAGCGGATGCACCATCTACAGCCTCAGTTCCGG
TCATGTCAAGTGCGGTGTGTCCGTGATCCGTGTCTCCGGGCCGCAAACAA
AGAAGGCCCTCCGAGCAATTGTTGCAAACAAAGAATACGAGCCAAAGGCT
CGTCAGGCGTATCTGAAATCCTTCTACCATCCCGCCAGCAAAGAGATGAT
TGACCGTGGGCTCTTACTTTGGTTTCCGGGACCGGCTTCTTTCACTGGCG
AGGATTCCTGCGAGTTTCAGGTACACGGGTCCCTGGCAGTCATTGCGGCC
ATGTTGGATGCTCTGGGAAAAGTGGATGGATTGCGGCCGGCGGAGCCGGG
AGAGTTCACAAAGAGAGCGTTCTTTGGTGGCAAACTGGATTTGACAGAGG
TGGAGGGATTGGCCGATCTTATCCATGCTGAAACGGAGGCGCAAAGAAAG
CAGGCACTGCTACAAAGCACTGGAGCACTGGCTCGACTCTACGACACTGG
CGCCGTCGACTTATTCGCTGTGCTGCCCATTTGGAGGCCTACATAGACTT
CGCCGAAGAGGAGCAAATCGAAGCGGCATCATCCTGCAACTCGCAAGACT
AAAGCGGTAAAGCGTGAGAATCCCGAGCATTGAGTGACCAGCGCAGGAGA
GCTCCTCCGCGACGAATCCGCCTGGGATCATTGAGCACCAATGTTGGCCA
AAGTATCTCGCAATTCCCTCTGGCCAC
FMO06474.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18528-RA | 1676 | CG18528-RA | 79..838 | 9..755 | 3385 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24359253..24359561 | 504..196 | 1545 | 100 | Minus |
| 3R | 32079331 | 3R | 24359876..24360066 | 199..9 | 955 | 100 | Minus |
| 3R | 32079331 | 3R | 24358978..24359200 | 714..501 | 665 | 92.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:12:23 has no hits.
FMO06474.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:37 Download gff for
FMO06474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18528-RA | 74..821 | 1..739 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:56:38 Download gff for
FMO06474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18528-RA | 56..803 | 1..739 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:39 Download gff for
FMO06474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18528-RA | 74..821 | 1..739 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:39 Download gff for
FMO06474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24359878..24360071 | 1..197 | 97 | | Minus |
| 3R | 24358933..24359197 | 504..755 | 92 | <- | Minus |
| 3R | 24359254..24359559 | 198..503 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:37 Download gff for
FMO06474.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20184655..20184919 | 504..755 | 92 | <- | Minus |
| arm_3R | 20184976..20185281 | 198..503 | 100 | <- | Minus |
| arm_3R | 20185600..20185793 | 1..197 | 97 | | Minus |
