FMO06478.5prime Sequence
1136 bp (985 high quality bases) assembled on 2008-09-15
> FMO06478.5prime
CAGTCGACATGAATTTCGAAAGTCATCTGATTGTTTGCATTAGTTTGCTT
CTTCAATTACGGATGGGAGCAACTATGCCTATGGAACGGCCACTCCCCCC
CTCTGTGTATGCACAGGCTAGGCATTGGAACGTGCTTGAAACAGTCGTAA
ATAATATGCGGATCACTAAAAGGCCGTGGATAGTTACAAAAACTAAACCG
TGCGGTGAGGTGATTAGGGAAACCTACATGTTGAGCCCCAACGAAGAGGA
ACTCATAAGGAGAACGGAAGTCATGCTCTTGCAAGCTCAAGGAAAATTGG
AATGTTTACTTAGCCAGTTTCAACCGACATTACGACTTGGCAGTGTCTAC
AATAATCCCTTTCTAAACCCGGTCGGTTTTGGTTTTCCTGACTATAACGT
CTTCCAAAATTTTCCGTTTATCCCGGAATTTAAGCCGCAACGTATTCCTC
CCGAAGAAGATCGCAGTAATGAAAATAATCCTCGCCGAGAAGATCCGCGG
GTAAATGAGCAGGATGCGTGGAATTTACGCCCTCAAGACGTCCCCAAAGA
AAATGAACACATTCCCAATAGTGAATCGGATAGTGATAGATGGCTGCCAA
ATCCAACATCCACACACCGGCCTATCGTAACTTTGCCTACCCTGGCACCC
CCAAACTTGAAGGATACGGAGCCCATATGGGTTCCAGTCCCAGAACCAAC
ATCAACCGAGCGAAGTTCGGTCCCGCTGCCCACGCTCGCACCCAAAGGCG
ACGGAACTGACTCGACATCGATGACTTTTTGGCAAAGGTGGATCTCACTG
TCGCGGACATCAAAAGAGGAGGATGGCCAGGTGGTCACCACAATCGTGGT
CAAACAAGGACGCGTTCTAAGTGCCAGTTTGCACTGAGCAATGAGAACGA
ACAGGGGGTGCGGCAAACTATCAAAGTCGCACTGGAAAAGCAAGCTTTCT
AGACCATTCGTTTGGCGCGCGGCCCAGTAAGTGGTCAAATCTTATCTATC
ATATCCATATCACACTAGCCTAAGAGTTCCTGGTCATGACATGGTCTGGA
TCCCACCAATAAAACGCCCGGGCGGCACCGAACGTCTCGAACAAATCAGA
ATGGAGTCTAAGGCTATTACTGGATCATACAACGAA
FMO06478.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31769-RA | 1086 | CG31769-RA | 55..987 | 9..939 | 4555 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14109696..14110575 | 939..62 | 4190 | 99.4 | Minus |
| 2L | 23513712 | 2L | 14110632..14110685 | 62..9 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:53:33 has no hits.
FMO06478.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:11 Download gff for
FMO06478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31769-RA | 49..987 | 1..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:56:45 Download gff for
FMO06478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31769-RA | 49..987 | 1..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:58 Download gff for
FMO06478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31769-RA | 49..987 | 1..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:58 Download gff for
FMO06478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14109696..14110574 | 63..939 | 99 | <- | Minus |
| 2L | 14110632..14110691 | 1..62 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:11 Download gff for
FMO06478.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14109696..14110574 | 63..939 | 99 | <- | Minus |
| arm_2L | 14110632..14110691 | 1..62 | 93 | | Minus |
