FMO06480.5prime Sequence
1084 bp (982 high quality bases) assembled on 2008-09-15
> FMO06480.5prime
CAGTCGACATGCAGCGATTTTTGGGAAGGAGCAGCCAAAGCCTTTTGCTA
AGATGTGGTCATCGCTATCTGGCCACCACTCCTGTGGAGGAGGTCATATT
TCCCACCAAATCGGATTTTCCCAGTCGTCATATTGGGCCTCGAAAGACGG
ATGTGGTGGCCATGTTGGATACTTTGGGCTTCAAGTCCCTGGCGGAGCTC
ACAGAGAAAGCTGTGCCCCAGAGCATTCAACTGAAGAGGGAACTCGACCT
GGACAAACCTCTGAATGAGCACGAGCTAATCCGCCGAATTCGCGACATCT
CGCTAAAGAATCAACTGTGGCGCTCCTACATCGGAATGGGTTACCACAAC
TGCCATGTGCCGCACACCATTATCCGGAATATGTTCGAGAATCCGGGTTG
GACCACTCAGTACACCCCGTACCAGCCGGAAATCGCCCAGGGACGCTTGG
AGTCGCTGCTGAACTATCAGACCCTGGTAACCGATCTCACCGGCTTGGAT
GTGGCCAATGCCTCGCTATTGGACGAGGGAACCGCTGCTGCCGAGGCCAT
GTGCCTGGCCACCAGGCACAACAAGCGCAAAAAGCTCTACCTGTCGAACA
GGGTGCATCCGCAGACGCTGTCCGTATTCAAGACGCGAACGGAAGCCTTG
GAGCTGGAAATCGTGGTGGGACCTATTTGAACAGGCGGATCTGCCAAGCC
GCGAAATTGGCTGGCATTCTTCTCCAGTATCCAGATACTTATGGTGATGT
CAAGGACTTCGAGGATATCCCAGCTTTGGCAAAGAAAATGGGACCCTCGT
GGTGGTGGCGACCGATTTGTTGTCGTTAACCCTTCTGCGTCCTCCGGCGG
AATTTGGAGCTGATATTGCAGGGGGAACCTCCCAGCGATTGGGAGTTCCT
CTGGGAATACGTGGCCCCCATGCCGGATTTTTGCTGCAGCAGAGCTGGTG
CGGCTAATGCCGGGAAGGATGATGGCGTGCCAGGGTAGGACGGAAACGAA
TGCCTATCGTCTGGCCCTGCAACCAGGGAGCGCCTATCGGCGGAATAGGA
ACAGTACATTGGCACGGACAAGCCTTCCTGGCCA
FMO06480.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3999-RB | 3074 | CG3999-RB | 62..1152 | 8..1084 | 4760 | 97.1 | Plus |
| CG3999-RA | 3197 | CG3999-RA | 62..1152 | 8..1084 | 4760 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10252171..10252692 | 265..788 | 2475 | 99 | Plus |
| 3R | 32079331 | 3R | 10251579..10251756 | 8..185 | 890 | 100 | Plus |
| 3R | 32079331 | 3R | 10252797..10253034 | 792..1022 | 700 | 92.1 | Plus |
| 3R | 32079331 | 3R | 10251887..10251967 | 184..264 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:12:35 has no hits.
FMO06480.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:42 Download gff for
FMO06480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3999-RA | 62..1110 | 8..1047 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:56:48 Download gff for
FMO06480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3999-RA | 62..1110 | 8..1047 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:46 Download gff for
FMO06480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3999-RA | 62..1110 | 8..1047 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:46 Download gff for
FMO06480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10251579..10251756 | 8..185 | 100 | -> | Plus |
| 3R | 10251889..10251967 | 186..264 | 100 | -> | Plus |
| 3R | 10252171..10252697 | 265..792 | 98 | -> | Plus |
| 3R | 10252798..10253058 | 793..1042 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:42 Download gff for
FMO06480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6077301..6077478 | 8..185 | 100 | -> | Plus |
| arm_3R | 6077611..6077689 | 186..264 | 100 | -> | Plus |
| arm_3R | 6077893..6078419 | 265..792 | 98 | -> | Plus |
| arm_3R | 6078520..6078780 | 793..1042 | 93 | -> | Plus |
