FMO06481.5prime Sequence
1140 bp (997 high quality bases) assembled on 2008-09-15
> FMO06481.5prime
CAGTCGAACATGTCCTCCGGAAAGATCCTGCCACGTCGCCAGGCGGTGCC
AGTGCTCTACACCAGGGGCACCCATTACGAAGTTGGCTTCGATATGGGTC
GCACATTTGGGTCCATGATCAAGAACTTTCTGATCTTATCGAAGCCCCTC
AACGAGACCTACTTGCCGCTCTACCAGTCGCCAAAAGGCAGGCAGATCTA
CAACGAGACCCTGGGTTCGGTGAAGGACAGCTTCCCTCAATATGTGCGCG
AACTGGAGGGCGTGGCCGATGGTGCGGAGGTGGAATTCCATAAGCTATTT
TTGCTGCATCTGGATGAGATTCTACCGCAGGCATTGAAGCACCAACCACG
TAGCAAAAACCAACCAACCGGCTGCTCCACCATCATTGTTAACCAAAAGA
ATTGCCGCCTTTTGGGCCACACGGAGGATGCACTGACGGAGACCCTGAAT
CACTACTACTTCGTGGTGGCACACATCATCAGTGACAAGCCGCAGGGCAA
GTACAACGTTAAGGAGGAGCACTTCATGTCCCTCTGCTACGCTGGCCATC
TGCCCGGATACACTATGAGCCATAATCATCATGGATTGGTCTTCAGCATC
AACACCATCAGTGCGGAGCTCTTGCGCAGCGGCAAGACACCGCGACACTT
CATCACCCGGGCTCTGTTGGCCACCAGCAACGTGGACGATGCCTTCCGCG
TGCTCAAGGATGCGGGAGTGGGTGCAGCGGATGCCTGTTCCATCAATTTC
ACCTTCCTGGCGGATCCCCGCCAAATGTGCTACAATGTGGAGATGGCACC
ATCGCCGGACCGCAAGAATTGAGTCTCATTTGAATATCAAGGAAGGGCCG
CTGGGCGAGCACAACTACCATGTCAATCATTCGATCGCATTCGGCAGGAT
CAGGCAACGATCTGATGATTAGCTCGAGCATCTCAGGATGCAACATTTGG
AGCGTACAATCCGCCGATGAGCGAGCAGGATGTGCGCACCATGCTGGGCG
GACGTGGTCGGCGGAGTTTACTGCCTCTGGCGGTAAAACACAGCTGCGAC
AAGGTGGTTCAGAACATTGGCGTTGGCATCTTCGATCTCAATGTCAGAAC
ATTCCTGATTCGACATTCCAGCCGAGAGCGACACCACGTG
FMO06481.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
t-RB | 1632 | CG12120-RB | 232..1322 | 10..1097 | 5050 | 97.9 | Plus |
t-RA | 1975 | CG12120-RA | 232..1322 | 10..1097 | 5050 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 9218953..9219187 | 640..406 | 1175 | 100 | Minus |
X | 23542271 | X | 9218308..9218529 | 1097..879 | 655 | 91.5 | Minus |
X | 23542271 | X | 9218773..9218894 | 762..641 | 610 | 100 | Minus |
X | 23542271 | X | 9219253..9219365 | 405..293 | 565 | 100 | Minus |
X | 23542271 | X | 9221210..9221313 | 294..191 | 520 | 100 | Minus |
X | 23542271 | X | 9218588..9218704 | 879..762 | 510 | 97.5 | Minus |
X | 23542271 | X | 9221415..9221510 | 191..96 | 480 | 100 | Minus |
X | 23542271 | X | 9222939..9223026 | 97..10 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:06:48 has no hits.
FMO06481.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:44 Download gff for
FMO06481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
t-RA | 225..1329 | 1..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:56:50 Download gff for
FMO06481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
t-RA | 225..1329 | 1..1103 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:40 Download gff for
FMO06481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
t-RA | 225..1329 | 1..1103 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:40 Download gff for
FMO06481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 9222940..9223033 | 1..96 | 95 | | Minus |
X | 9218588..9218704 | 762..879 | 97 | <- | Minus |
X | 9218774..9218894 | 641..761 | 100 | <- | Minus |
X | 9218953..9219187 | 406..640 | 100 | <- | Minus |
X | 9219253..9219363 | 295..405 | 100 | <- | Minus |
X | 9221210..9221313 | 191..294 | 100 | <- | Minus |
X | 9221416..9221509 | 97..190 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:44 Download gff for
FMO06481.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 9112621..9112737 | 762..879 | 97 | <- | Minus |
arm_X | 9112807..9112927 | 641..761 | 100 | <- | Minus |
arm_X | 9112986..9113220 | 406..640 | 100 | <- | Minus |
arm_X | 9113286..9113396 | 295..405 | 100 | <- | Minus |
arm_X | 9115243..9115346 | 191..294 | 100 | <- | Minus |
arm_X | 9115449..9115542 | 97..190 | 100 | <- | Minus |
arm_X | 9116973..9117066 | 1..96 | 95 | | Minus |