Clone FMO06481 Report

Search the DGRC for FMO06481

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:64
Well:81
Vector:pMK33-CFH-BD
Associated Gene/Transcriptt-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06481.5prime Sequence

1140 bp (997 high quality bases) assembled on 2008-09-15

> FMO06481.5prime
CAGTCGAACATGTCCTCCGGAAAGATCCTGCCACGTCGCCAGGCGGTGCC
AGTGCTCTACACCAGGGGCACCCATTACGAAGTTGGCTTCGATATGGGTC
GCACATTTGGGTCCATGATCAAGAACTTTCTGATCTTATCGAAGCCCCTC
AACGAGACCTACTTGCCGCTCTACCAGTCGCCAAAAGGCAGGCAGATCTA
CAACGAGACCCTGGGTTCGGTGAAGGACAGCTTCCCTCAATATGTGCGCG
AACTGGAGGGCGTGGCCGATGGTGCGGAGGTGGAATTCCATAAGCTATTT
TTGCTGCATCTGGATGAGATTCTACCGCAGGCATTGAAGCACCAACCACG
TAGCAAAAACCAACCAACCGGCTGCTCCACCATCATTGTTAACCAAAAGA
ATTGCCGCCTTTTGGGCCACACGGAGGATGCACTGACGGAGACCCTGAAT
CACTACTACTTCGTGGTGGCACACATCATCAGTGACAAGCCGCAGGGCAA
GTACAACGTTAAGGAGGAGCACTTCATGTCCCTCTGCTACGCTGGCCATC
TGCCCGGATACACTATGAGCCATAATCATCATGGATTGGTCTTCAGCATC
AACACCATCAGTGCGGAGCTCTTGCGCAGCGGCAAGACACCGCGACACTT
CATCACCCGGGCTCTGTTGGCCACCAGCAACGTGGACGATGCCTTCCGCG
TGCTCAAGGATGCGGGAGTGGGTGCAGCGGATGCCTGTTCCATCAATTTC
ACCTTCCTGGCGGATCCCCGCCAAATGTGCTACAATGTGGAGATGGCACC
ATCGCCGGACCGCAAGAATTGAGTCTCATTTGAATATCAAGGAAGGGCCG
CTGGGCGAGCACAACTACCATGTCAATCATTCGATCGCATTCGGCAGGAT
CAGGCAACGATCTGATGATTAGCTCGAGCATCTCAGGATGCAACATTTGG
AGCGTACAATCCGCCGATGAGCGAGCAGGATGTGCGCACCATGCTGGGCG
GACGTGGTCGGCGGAGTTTACTGCCTCTGGCGGTAAAACACAGCTGCGAC
AAGGTGGTTCAGAACATTGGCGTTGGCATCTTCGATCTCAATGTCAGAAC
ATTCCTGATTCGACATTCCAGCCGAGAGCGACACCACGTG

FMO06481.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:06:49
Subject Length Description Subject Range Query Range Score Percent Strand
t-RB 1632 CG12120-RB 232..1322 10..1097 5050 97.9 Plus
t-RA 1975 CG12120-RA 232..1322 10..1097 5050 97.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:06:47
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 9218953..9219187 640..406 1175 100 Minus
X 23542271 X 9218308..9218529 1097..879 655 91.5 Minus
X 23542271 X 9218773..9218894 762..641 610 100 Minus
X 23542271 X 9219253..9219365 405..293 565 100 Minus
X 23542271 X 9221210..9221313 294..191 520 100 Minus
X 23542271 X 9218588..9218704 879..762 510 97.5 Minus
X 23542271 X 9221415..9221510 191..96 480 100 Minus
X 23542271 X 9222939..9223026 97..10 440 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:06:48 has no hits.

FMO06481.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:44 Download gff for FMO06481.5prime
Subject Subject Range Query Range Percent Splice Strand
t-RA 225..1329 1..1103 97   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:56:50 Download gff for FMO06481.5prime
Subject Subject Range Query Range Percent Splice Strand
t-RA 225..1329 1..1103 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:40 Download gff for FMO06481.5prime
Subject Subject Range Query Range Percent Splice Strand
t-RA 225..1329 1..1103 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:40 Download gff for FMO06481.5prime
Subject Subject Range Query Range Percent Splice Strand
X 9222940..9223033 1..96 95   Minus
X 9218588..9218704 762..879 97 <- Minus
X 9218774..9218894 641..761 100 <- Minus
X 9218953..9219187 406..640 100 <- Minus
X 9219253..9219363 295..405 100 <- Minus
X 9221210..9221313 191..294 100 <- Minus
X 9221416..9221509 97..190 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:44 Download gff for FMO06481.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 9112621..9112737 762..879 97 <- Minus
arm_X 9112807..9112927 641..761 100 <- Minus
arm_X 9112986..9113220 406..640 100 <- Minus
arm_X 9113286..9113396 295..405 100 <- Minus
arm_X 9115243..9115346 191..294 100 <- Minus
arm_X 9115449..9115542 97..190 100 <- Minus
arm_X 9116973..9117066 1..96 95   Minus