FMO06482.5prime Sequence
1089 bp (971 high quality bases) assembled on 2008-09-15
> FMO06482.5prime
CAGTCGACATGGAGGTGTACACGTCGGACAGTTCGGACACGGATTCGCGG
GAGCAGAAGACACTGGACTTTGGCCGTATGAGCCTGGACCTGGTCACGCT
GGAGGATCACCTGGCCTCGCCGCAGAAGGCTCTGCTCAAGTCCAGTGGCG
ACATCGAGACCATGCTGCTCAATCACAATCGATTGGTCGGCTTGCCCCGT
CTACTGCTGCAGTTCGGCAATCTGAAGATTCTGGATCTCAGCTCGAATGC
AATCACCACGCTGCCGGATGCCGTCTGCCAACTGCCGCTGGTCACCCTGA
TAGCCAAGAATAACCTGCTGACCAATGCCTCGCTGCCCAAATCGCTGCTC
ACCAAAATGGCCAATGGCAATGGCAACGGCAATGCCACCGGTGGCACCAA
CTCCACGCTCAAGGAGCTCAATCTGAGTGGCAATCAATTAACCCACTTTC
CGGAACAGGTCACCGAGCTGCGCCACCTCAAGTACCTCTATCTGGGCGGT
AACAAGATCTCCAGCGTCTCGAAGGATATCTGGAAGATGCAAAGTCTGCA
TGTGCTGTCCCTCGGCGGCAATCTAATCAGCGAAGTTCCCGAGGCGGTGG
GTTCCCTTAATCAGCTGCAGGCTCTCGTCCTGTGCGACAATCTGATCGAG
ATTCTGCCGACCAGCATCGCCCGACTGAAGAACCTCAAGTCGCTGCTGCT
GCACAAGAACCGTCTGCGTCATCTTCCCAAGGACATCGTGGCACTGAAGA
ATCTGACTGAGCTGAGCCTACGTGACAATCCGCTGGTGGTGCGCTTCGTG
CAGGACATGGCGCTGAAGCCACCCACCCTCCTCGAGCTGGCTGGTCGCAT
GGTGAAGGCCAGTGGCCAGAGACCCGGACCCTATGACATCCCCAGGACAC
TGGCCGAGTATTTGAACAGCGCCAATTGCTGCGTGAATCCCAACTGCAGG
GCGTCTTCTTCGACACGGGTTGAGCACATCAAGTTCTTGAACTTTGCGGA
AGTACCGTGTACTCATTGCTGAGTACTCTGCTCCCTCCCAAGGCACCGAG
CCGAAGACACCGGCGGGCGCGTGGAATCATTCGGTTCGC
FMO06482.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:06:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32687-RB | 2803 | CG32687-RB | 837..1908 | 8..1075 | 4955 | 98.1 | Plus |
| CG32687-RA | 2352 | CG32687-RA | 386..1457 | 8..1075 | 4955 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:06:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10485711..10486247 | 544..8 | 2685 | 100 | Minus |
| X | 23542271 | X | 10483342..10483560 | 761..543 | 1095 | 100 | Minus |
| X | 23542271 | X | 10483004..10483242 | 995..760 | 1035 | 97.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:06:29 has no hits.
FMO06482.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:28 Download gff for
FMO06482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32687-RA | 382..1438 | 1..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:56:31 Download gff for
FMO06482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32687-RA | 377..1433 | 1..1057 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:42 Download gff for
FMO06482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32687-RA | 382..1438 | 1..1057 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:42 Download gff for
FMO06482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10483342..10483558 | 545..761 | 100 | <- | Minus |
| X | 10482942..10483240 | 762..1057 | 94 | <- | Minus |
| X | 10485711..10486251 | 1..544 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:28 Download gff for
FMO06482.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10377375..10377591 | 545..761 | 100 | <- | Minus |
| arm_X | 10376975..10377273 | 762..1057 | 94 | <- | Minus |
| arm_X | 10379744..10380284 | 1..544 | 99 | | Minus |
