FMO06484.5prime Sequence
1166 bp (1017 high quality bases) assembled on 2008-09-15
> FMO06484.5prime
CAGTCGACATGAACAAAACGATTCTGCACTGGAGCTACCTGAATTTCAAG
GATGTCCCGATGGATCTGTTCCTCTACGAGGATCTCGAGGAAGTCTACCT
CAAGGAGAACTTCATCTCGGTGATACCCAAATGGCTGCTGAACATCACCA
CACTGAAGTTTATTCATTTGGCTGGCAATAATCTGAGTGAACTGCCGGTG
GACATCTATATGCTGGAGAATCTGGAGTTCCTGGACGTATCCAACAATGA
GCTCAAGGAGCTGCCCCCCACACTGGGTCTCCTGTTGAATCTCCAGCAGC
TGAATGTGTCGGGGAATCAGCTCACCGAACTACCAGTGGAGCTAAGTGGT
TTGCGCAATCTGGAGCACCTGAACATTGGCAAGAACCAATTTCGACGCCT
GCCGGTTCAGCTGAGCGAGTGCGTCCGCCTCAACGAGCTGAATGTGAGCG
ACAACGAGGCGCTTGTCCACATCCCCGAGCGCATCTCCAACCTGCCCATG
CTGCAGTCCCTCGCCGCAGATCGTTGTGCGCTCGTCTACTTGCCGGCAGC
TCTCTCCAAGTTCATGAACCATGTGCGCATCTTCCACAACACCGCTATCA
ACTACATACCCATGGTCTATGAGAGGTTCTATCAAAACTTTTACGACAAC
CGCCAGAGGAATACTCCCGTCGCCGTGCATCGCAAGGGTTTGTTTTGGGT
CCGCGAGCTGGAGACCAGCACCAGGTTGCTTCTTCCGGTTGGCACCCGCA
CAGTATTTCCGGTTCCGTCGGTGGAGAACCGCGTTTTCGCTCTACGATGA
CTGTCTGCACGCTCTGCAGACGCTGAACCGCTTCACGCCCGTATATGAGA
ATGTAGCCATGCATCGTCTGCTCCCAGAACCGTACATCAGTTCCCACATC
AACAATGGACCATCGCCCGCTGCACGAACTCCACCCTGCCTCCAGATTGT
CCCTATTACCTCGTACCTACTTCATGGGTGGTGAAAGGCGTGGCAGTAAC
ATCAAAACCAGCTCCTTCACCTGCCAACTTCTGCCACACCGGATGGTGGT
CTCTTTGGTTGACTACAATGATAAGAAGTACTTACCAATTGGCTTGCCGA
GTCTCGATGAAGACGACGAAGTGAAGAGGAATAAACATGGCAGCAACAGC
AACTTTTCTGAAACAT
FMO06484.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11099-RB | 2173 | CG11099-RB | 258..1389 | 9..1148 | 5030 | 97.1 | Plus |
| CG11099-RA | 2319 | CG11099-RA | 404..1535 | 9..1148 | 5030 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20236638..20236968 | 9..339 | 1655 | 100 | Plus |
| 2R | 25286936 | 2R | 20237693..20237957 | 671..935 | 1230 | 99.2 | Plus |
| 2R | 25286936 | 2R | 20237026..20237211 | 339..524 | 930 | 100 | Plus |
| 2R | 25286936 | 2R | 20237289..20237436 | 523..670 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:52:59 has no hits.
FMO06484.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:01 Download gff for
FMO06484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11099-RA | 397..1388 | 1..998 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:49 Download gff for
FMO06484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11099-RA | 397..1388 | 1..998 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:42 Download gff for
FMO06484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11099-RA | 397..1388 | 1..998 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:42 Download gff for
FMO06484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20236631..20236968 | 1..339 | 99 | -> | Plus |
| 2R | 20237027..20237209 | 340..522 | 100 | -> | Plus |
| 2R | 20237289..20237436 | 523..670 | 100 | -> | Plus |
| 2R | 20237693..20238004 | 671..987 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:01 Download gff for
FMO06484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16124136..16124473 | 1..339 | 99 | -> | Plus |
| arm_2R | 16124532..16124714 | 340..522 | 100 | -> | Plus |
| arm_2R | 16124794..16124941 | 523..670 | 100 | -> | Plus |
| arm_2R | 16125198..16125509 | 671..987 | 96 | -> | Plus |
