FMO06486.5prime Sequence
1128 bp (970 high quality bases) assembled on 2008-09-15
> FMO06486.5prime
CAGTCGACATGTTTAAGTCCCTGTTCGATGCCGCGCAGAACTCAACGTTC
AAGTCGCCATTCACTAGCGTCAACTGCCAGTCAGCCACGCCCACTTCCGC
CCCCACATCCACCGCGGTGGTGACCCCCACCCTCAAGGATGTTGCTCCAC
GCCAGCTGACTCGAAACCACAACATCGCTGCCGCTGCCGTTGCCGAGGGT
GACTCCTGCGAATTCGGCTCGAACCACTACTTCCTGCTGTGCGGCCTGGG
CGGCATCATCTCGTGCGGCTCCACACACACCATGGTGGTGCCCCTGGATT
TGGTCAAGTGCCGCCTGCAGGTGGACCCGGCCAAGTACAAGAGCGTGTTC
ACCGGCTTCCGCATCAGCTTGGCTGAGGAGGGCGTCCGCGGATTGGCCAA
GGGATGGGCACCCACCTTCATCGGCTACTCGATGCAGGGTCTGTGCAAGT
TCGGCCTGTACGAGGTCTTCAAGAAGGTGTACGGCGATGCTATCGGCGAG
GAGAACGCATTCCTCTACAGAACCGGACTCTATTTGGCTGCATCGGCATC
CGCTGAGTTCTTCGCCGATATCGCCCTGGCGCCCATGGAGGCGGCCAAGG
TCAAGATCCAGACCACGCCCGGATTCGCCAAGACATTGCGCGAGGCTCTG
CCCAAGATGACCGCCCAGGAGGGCGTGACCGCCTTCTACAAGGGCCTGGT
GCCATTGTGGATGCGCCAGATCCCATACACCATGATGAAGTTCGCCTGCT
TCCAGCGGACGCTGGAGCTGCTGTACAAGTATGTGGTGCCCAAGCCACGT
GCCGATTGCACCAAGGGTGAGCAGTTGGTGGTGACCTTCGCCGCCGGTTA
CATTGCCGGCGTGTTCTGCGCCATCGTCTCGCATCCGGCGGACACAGTGT
GTCCAAGCTGAACCAGGCCAGGGTGCCTCCGCCCTGGAGTGGCCAACAGC
TGGGTTGGTCTGGATGTGGGGCGGTTGGTGCCCAGATCGTGATGATCGGC
ACATTGACCGCGCCCAATGGTTCATCCTACGATGCCGGTCAGGTGTTCCT
GCGCATGCACGCCCACCACCCACAGAATGTCCTAGATCCCGTGAGAAAAA
GCGGGGCCGTGAATGGCGAGCAGGCAAG
FMO06486.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9090-RC | 1265 | CG9090-RC | 38..1160 | 8..1123 | 5080 | 97.7 | Plus |
| CG9090-RB | 1339 | CG9090-RB | 112..1234 | 8..1123 | 5080 | 97.7 | Plus |
| CG9090-RA | 1385 | CG9090-RA | 158..1280 | 8..1123 | 5080 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20279400..20280166 | 963..201 | 3620 | 99.3 | Minus |
| 2R | 25286936 | 2R | 20280235..20280428 | 201..8 | 970 | 100 | Minus |
| 3L | 28110227 | 3L | 14538726..14539072 | 435..781 | 745 | 81 | Plus |
| 3L | 28110227 | 3L | 14539553..14539695 | 779..920 | 365 | 85.3 | Plus |
| 3L | 28110227 | 3L | 14538191..14538415 | 207..431 | 300 | 75.6 | Plus |
| 2R | 25286936 | 2R | 20279216..20279331 | 1077..965 | 245 | 90.6 | Minus |
Blast to na_te.dros performed 2014-11-28 19:22:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dpse\mini-me | 4622 | Dpse\mini-me DPSEMINIME 4622bp | 300..323 | 84..107 | 111 | 95.8 | Plus |
FMO06486.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:58 Download gff for
FMO06486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9090-RA | 151..1244 | 1..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:56:55 Download gff for
FMO06486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9090-RA | 148..1241 | 1..1085 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:19 Download gff for
FMO06486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9090-RA | 151..1244 | 1..1085 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:19 Download gff for
FMO06486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20279401..20280165 | 202..962 | 99 | <- | Minus |
| 2R | 20280235..20280431 | 1..201 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:58 Download gff for
FMO06486.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16167740..16167936 | 1..201 | 98 | | Minus |
| arm_2R | 16166906..16167670 | 202..962 | 99 | <- | Minus |
