Clone FMO06489 Report

Search the DGRC for FMO06489

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:64
Well:89
Vector:pMK33-CFH-BD
Associated Gene/TranscriptPebIII-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06489.5prime Sequence

404 bp (404 high quality bases) assembled on 2008-09-15

> FMO06489.5prime
CAGTCGACATGAAGATGATACTTGCGCTTGTCGTCCTTGGACTGGTGCTG
GTCGCCGCCGAGGATAAGTACACCACCAAGTACGACAACATCGACGTCGA
CGAGATCCTGAAGTCGGACCGCCTCTTCGGAAACTACTTCAAGTGCCTGG
TGGACAACGGAAAGTGCACCCCGGAGGGCCGGGAGCTCAAGAAGTCCCTG
CCGGACGCCCTGAAGACGGAGTGCAGCAAGTGCAGCGAGAAGCAGCGCCA
GAACACCGACAAGGTCATTCGCTACATCATCGAAAACAAGCCCGAGGAGT
GGAAGCAGCTGCAGGCCAAGTACGATCCCGATGAGATCTACATCAAGCGC
TACCGCGCCACCGCCGAGGCCTCGGGAATCAAGGTGGCAAGCTTTCTAGA
CCAT

FMO06489.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
PebIII-RC 836 CG11390-RC 333..710 9..386 1890 100 Plus
PebIII-RB 768 CG11390-RB 265..642 9..386 1890 100 Plus
PebIII-RA 586 CG11390-RA 83..460 9..386 1890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24027015..24027392 9..386 1890 100 Plus
Blast to na_te.dros performed 2014-11-28 20:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
G-element 4346 G-element DMREPG 4346bp Derived from X06950 (g8427) (Rel. 16, Last updated, Version 1). 1589..1626 57..94 118 78.9 Plus

FMO06489.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:41 Download gff for FMO06489.5prime
Subject Subject Range Query Range Percent Splice Strand
PebIII-RA 83..464 9..391 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:56:59 Download gff for FMO06489.5prime
Subject Subject Range Query Range Percent Splice Strand
PebIII-RA 96..477 9..391 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:28 Download gff for FMO06489.5prime
Subject Subject Range Query Range Percent Splice Strand
PebIII-RA 83..464 9..391 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:28 Download gff for FMO06489.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24027015..24027396 9..391 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:41 Download gff for FMO06489.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19914538..19914919 9..391 99   Plus