FMO06491.5prime Sequence
928 bp (574 high quality bases) assembled on 2008-09-15
> FMO06491.5prime
CTTATCAATCGACATGGCCAAAACGCCCCCGCTCCGCCCCCACGGTAACA
TGGCCAAATTCCTGGCAGCCCTCGGCATCTGCTCTTGGCTCCTCGTTTCG
GCCACCGCTCACAACTGCCAACACCAGCATCCAAAGGCCCACGAGGTCGT
CCATGGCGTGCGCATCCAACTGGCTGATAGCGAAGATGACTCCGCCGGAG
ATCCAGCGAGGCATAGCGTCCGACGGCGCAGCGTTGCCGCCGAGCAGCCA
CTGCGAATTCTGCTCGTCTACGACGAATCCGTCTACAGGCTGGAAGAAGA
GAAATTTAATTTGATAAATGACACCGTTCTCCCGGAAGCCGAGCAGTTCT
GGGAACAGGGCCTGATGGTGCGAGAGACCAAGGGCGTTATCCGACTCAAT
AGGAAATGCGACAGCACGCAGGTGTACGTGAAAAACGGACACACCCACTG
CATCGACCATTGCAAGGCGACGACGATGTGCGGCGAGGTTCAGGTGCCCG
ATGCGCACTTGGATGTATGTCGGGTGTGCAATGCCGCGGGTCAGAATTGT
AGAATCGATAGTAACACACAGCCGGGCGGAGGAATTGAGGATGCGGACTT
TGTGTTCTCGTGTCCGCCAGGCAGACGCAGCGTTGTTTCAAGGGTCTAAC
CGTTGCCTATGCGGCCCATTGTCAACAGGAAGCGGCTCTGGATCGTCCAA
TCGCCGGTCATGCGAATCTCTGTCCGGAGAGCATTATCACAAAGCCGCAA
GAACTGCTGACTCTGATCTCCTCCCGTAAACACGAGATTCTCCATGCACT
GGGATTCTCCGTGAACTTGAACGCATTCTTTATGGACGATGATGGAAAAC
CCGAACGCCCCGAAAATTAGACCCTGGCCAGCGTACTGAATGAAAATTGC
TGATCCATCAGGGAGCAACAAACCATTG
FMO06491.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Invadolysin-RA | 3610 | CG3953-RA | 733..1654 | 13..927 | 4135 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10156576..10156945 | 515..882 | 1495 | 94.9 | Plus |
| 3R | 32079331 | 3R | 10154222..10154367 | 144..289 | 730 | 100 | Plus |
| 3R | 32079331 | 3R | 10145400..10145534 | 13..147 | 675 | 100 | Plus |
| 3R | 32079331 | 3R | 10155975..10156091 | 401..517 | 585 | 100 | Plus |
| 3R | 32079331 | 3R | 10155822..10155905 | 320..403 | 390 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:33:03 has no hits.
FMO06491.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:23 Download gff for
FMO06491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Invadolysin-RA | 727..1654 | 7..928 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:46 Download gff for
FMO06491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Invadolysin-RA | 696..1623 | 7..928 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:38 Download gff for
FMO06491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Invadolysin-RA | 727..1654 | 7..928 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:38 Download gff for
FMO06491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10145394..10145532 | 7..145 | 97 | -> | Plus |
| 3R | 10154224..10154366 | 146..288 | 100 | -> | Plus |
| 3R | 10155712..10155742 | 289..319 | 100 | -> | Plus |
| 3R | 10155822..10155904 | 320..402 | 97 | -> | Plus |
| 3R | 10155977..10156088 | 403..514 | 100 | -> | Plus |
| 3R | 10156576..10156954 | 515..888 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:23 Download gff for
FMO06491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5971116..5971254 | 7..145 | 97 | -> | Plus |
| arm_3R | 5979946..5980088 | 146..288 | 100 | -> | Plus |
| arm_3R | 5981434..5981464 | 289..319 | 100 | -> | Plus |
| arm_3R | 5981544..5981626 | 320..402 | 97 | -> | Plus |
| arm_3R | 5981699..5981810 | 403..514 | 100 | -> | Plus |
| arm_3R | 5982298..5982676 | 515..888 | 94 | -> | Plus |
