FMO06492.5prime Sequence
894 bp (882 high quality bases) assembled on 2008-09-15
> FMO06492.5prime
CAGTCGACATGACAACCACTGGACTTCGACCACTGCTGAGCCTTCTGTTC
CTTGGATTGGGTGTGATACTCCTCTGTGATGTCAGCTCCTCGATTGCCAT
AGCTCCGTCCACATTTGGCACGGCAATAGCACGTGCTGGGAAGATATCCA
ACCAGCTTAAGGAGACGACGGCATGGAAGACCCTGACATCGCATCCGAAC
TCGCTTGTCCAACTGTTGCCATCGAGGGCCATGCGAGTGGTCCAGGAGGT
GGTAAGATCTCTGCGGAAGGAGCGTGAGATTGTGGCCACTACCTCGTTGG
GAAAAGTCAGGGGTCGCTATCAGAAGTATCGATCCGGAGAGCGAGGAGGC
TACTATAGTTTCAAAGGAATGCGATATGGAGCTCCGCCTACAGGAGCAAG
AAGATTCCGTGCTGCGGAGCCGGAGAAGCCGTGGTCTGGAATCCGTGATG
CTTCTCGGGAAGGTCAGAGCTGTCCGCATAAGAACATGATCCTGGACACT
TTCAAGGGAGACGAGGATTGCCTGTTCGTCAATGTGTTCACAACCCAAAT
GCCCAAGGATGATGAGTCTGCAGAGCAGCCAAAGCTTCCTGTTATGGTTT
GGCTGCATGGAGGAGGTTTCTCCTTTGGCTCCGGCAACTCTTTCCTCTAC
GGACCGGACTATCTAGTGGCTGAGGATATTGTCTTGGTCACACTGAACTA
CCGACTAGGTCCACTGGGTTTTTCTTACCGCAGGACCTGACGCTCCAGGT
AACCAGGGTCTCAGGGATCAAGGTACTGGCACTAAAGTGGGGTGCGGGGA
TAACATATCCCGCATTTGGTGGAAATCCCAATCACGTTACCATTTTCGGA
GAAGTCAGCTGGAACCTTCGTCCGTCCAAGTTGCTCCTTCTGTC
FMO06492.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:21:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10175-RE | 2809 | CG10175-RE | 64..941 | 9..894 | 4125 | 98.3 | Plus |
| CG10175-RA | 2370 | CG10175-RA | 64..941 | 9..894 | 4125 | 98.3 | Plus |
| CG10175-RC | 2463 | CG10175-RC | 157..1034 | 9..894 | 4125 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:21:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23524315..23524800 | 894..401 | 1980 | 97.2 | Minus |
| 3R | 32079331 | 3R | 23528675..23528828 | 162..9 | 770 | 100 | Minus |
| 3R | 32079331 | 3R | 23524853..23524990 | 403..266 | 675 | 99.3 | Minus |
| 3R | 32079331 | 3R | 23525496..23525602 | 266..160 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:21:02 has no hits.
FMO06492.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:06 Download gff for
FMO06492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-RC | 147..1034 | 1..894 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:57:04 Download gff for
FMO06492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-RA | 50..937 | 1..894 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:03 Download gff for
FMO06492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10175-RC | 147..1034 | 1..894 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:03 Download gff for
FMO06492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23524315..23524797 | 404..894 | 97 | <- | Minus |
| 3R | 23524853..23524989 | 267..403 | 99 | <- | Minus |
| 3R | 23525496..23525600 | 162..266 | 100 | <- | Minus |
| 3R | 23528676..23528832 | 1..161 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:06 Download gff for
FMO06492.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19354398..19354554 | 1..161 | 97 | | Minus |
| arm_3R | 19350037..19350519 | 404..894 | 97 | <- | Minus |
| arm_3R | 19350575..19350711 | 267..403 | 99 | <- | Minus |
| arm_3R | 19351218..19351322 | 162..266 | 100 | <- | Minus |
