FMO06493.5prime Sequence
1141 bp (1010 high quality bases) assembled on 2008-09-15
> FMO06493.5prime
CAGTCGACATGGCTCGACGAGATTATGCCCAAGACCGAGAATCTATCAAG
ACCTTCCTTTCGGAATTCTGCAAGTGCGACGATGATGGCAAAAAGGAGTT
CGTCTACGGATCTCAGCTGGTGAAGTTGGCCCATCGAGAGCAAGTTCTGA
TCACCATCGATCTGGATGATCTGGCGGAATTCAATGAAAGTCTCGCGGAG
GCGGTGGTCGACAATTGTCGGCGATACACGTCCATATTCAGCGATGTAAT
TGCTGAACTCCTGCCCAGCTACAAACAGCAGGAGGTACACGCCAAGGATG
CTCTGGATGTGTACATTGAGCACCGCCTGATGATGGAGTCCCGCACCAGG
AATCCCATGGAACAGCGCGATGAGCGGAACTCTTTCCCCTCGGAGCTGAT
GAAGCGATTCGAGGTGGGCTTCAAACCACTGTCCACAGAGAAGGCGCACT
CTATTCGCGAGGTTAAGGCCCAGCACATTGGTAAACTGGTCACCGTTCGC
GGCATTGTTACACGCTGCACGGAGGTTAAGCCCATGATGGTGGTTGCCAC
CTACACATGCGATCGCTGTGGCTCGGAGACGTATCAGCCAGTTAACTCGC
TATCCTTCACGCCCGTGCACGATTGCCCGTCGGATGATTGCCGAGTGAAC
AAAGCGGGAGGTCGTCTGTATCTGCAGACCCGCGGCTCCAAGTTCGTCAA
GTTCCAGGAGGTCAAAATGCAGAGCACAGCGACCAGGTGCCCGTGGGCCA
CATTCCGCGCAGCATGACCATCATGTGCAGGGGTGAGGTCACTCGAATGG
CCCAGCCTGGGGATCACATTGTGGTCTCTGGAGTGTTCTTGCCACTAATG
CGCACAGGTTTCGCTCAGATGATTCAGGGTTTGCTCTCGGAGACATTTCC
TTCAGCTCACCGCATCATCTGTATCAACAAGACGACGAGATTTCGGACAG
GATGCCGAGCTGACTCCAGAGAGCTGGAGGATTGGCCCAGGATGACTTCT
ACGAGCGCTTGTCACCAGCTTGGCACCCGGAATCTATGGCATTTGGAAGT
AATAAAGCCCTGCCTCTGCTGTTGTCCGGAGGATTGACACGCCAATGGCA
TGAAAATCTTGGCAACTACACTTGCCTGGAGGGGAATCCGG
FMO06493.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mcm7-RA | 2451 | CG4978-RA | 154..1275 | 9..1116 | 5040 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8892285..8892786 | 410..910 | 2400 | 99 | Plus |
| 3L | 28110227 | 3L | 8891842..8892213 | 38..409 | 1860 | 100 | Plus |
| 3L | 28110227 | 3L | 8892854..8893033 | 911..1083 | 400 | 90.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:38:38 has no hits.
FMO06493.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:27 Download gff for
FMO06493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mcm7-RA | 154..1216 | 9..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:57:06 Download gff for
FMO06493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mcm7-RA | 140..1202 | 9..1063 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:14:20 Download gff for
FMO06493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mcm7-RA | 154..1216 | 9..1063 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:14:20 Download gff for
FMO06493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8891749..8891779 | 9..39 | 100 | -> | Plus |
| 3L | 8891844..8892213 | 40..409 | 100 | -> | Plus |
| 3L | 8892285..8892786 | 410..910 | 99 | -> | Plus |
| 3L | 8892854..8892988 | 911..1040 | 94 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:27 Download gff for
FMO06493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8884849..8884879 | 9..39 | 100 | -> | Plus |
| arm_3L | 8884944..8885313 | 40..409 | 100 | -> | Plus |
| arm_3L | 8885385..8885886 | 410..910 | 99 | -> | Plus |
| arm_3L | 8885954..8886088 | 911..1040 | 94 | == | Plus |
