FMO06494.5prime Sequence
1141 bp (952 high quality bases) assembled on 2008-09-15
> FMO06494.5prime
CAGTCGACATGCGTTGGCCGCGAAAGCACACGTTCGGCTTGTGGCCCAAA
CGAAATGGTCGGAATCGCAGTAGTGGAGAAGCCACTGGGGGGCAACCCCA
GGCCACTGTGGCCACCATTTACGATCCTGGCTGCGAGGAGAAGGAGAAGT
ACACGGCCCAGAATGGCGATGATTACTATGGCCAGGCGCACACCGTCGAC
CTGGACGTGGCCAGCAAGTACTCCAAGCCCAAGGAGGCCCACTGGCTGGT
GCGGCGCATATTCTTCCTCAGCTGGATTACCAGTTACGATCGAGAGCAGG
CGTTCGCCGATTTGATTGCCGGCATCACCTTGGGCCTGACCATCATACCA
CAAAGTATTGCTTATGCCGCGCTGGCAGGACTCTCCTCGGAGTACGGCCT
GTACTCCGCCTTCATTGGCTCCATCATCTATGTTTTCTTTGGGACGATAC
CACAGGTGTCCATTGGACCCACCAGTCTGATGGCCATTCTCACCCTGCAA
TTCTGCGCCGACAAACCGGTGCAGGTGGTCATCGTGCTGGCCTTCCTCGC
CGGTTTGGTGGAACTGGCCATGGGTGTGTTCCAGCTGGGATTCATCGTGA
GCTTCATACCAGCTCCGGTTACCAAGGCTTTTACATCCGGCACTGCGCTG
ATCGTGGTCTTTGCCCAGATCAAGAATCTCTTAGGTGTTCGCATAAAGGG
ATTCCCCTCGATCGGTGACTTTTTCACCAATATCCGGCCCACGGATGCCG
CCATGGGAATCTCGTGCATGGGTGTGCTACTTTCGCTGCGGCTACTGTCG
CAAGTGAATTTCAAGCAGGACACGCCTGTTACGCGTCGCCTTAAGAAGAT
CCTGTGGTCATCAGTATTTCCCGCAATGCTCTGGTTGTCTTCTTCACTTG
GCCTTTTGGTTTTCATCTGAGTGAAAAGAACTTCCATTGAGCGGTCCCTT
TGCGCTTTCCTCCAAAGTTTCCACGGCAATGCCACAATCAAGCTGCCGCC
CTCCGCTCGAGTATACAAATACACCTATGTGTTACGGAAATCCTCCATGA
ACTGGCAGCGTAATGTGAGGGGGCAATTGTGGCGGATTGGCCAAGTGCCA
TTGCCAGCTTCCCTACGATGTAACTGATGCCCTCCAAGATG
FMO06494.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6125-RA | 2153 | CG6125-RA | 9..1119 | 9..1106 | 4865 | 96.9 | Plus |
| CG6125-RC | 2406 | CG6125-RC | 166..1163 | 122..1106 | 4285 | 96.4 | Plus |
| CG6125-RB | 2197 | CG6125-RB | 166..1163 | 122..1106 | 4285 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15404642..15405306 | 791..127 | 3310 | 99.8 | Minus |
| 3R | 32079331 | 3R | 15404086..15404357 | 1055..791 | 695 | 90.5 | Minus |
| 3R | 32079331 | 3R | 15405380..15405497 | 126..9 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:12:41 has no hits.
FMO06494.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:44:44 Download gff for
FMO06494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6125-RA | 1..1119 | 2..1106 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:56:51 Download gff for
FMO06494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6125-RA | 1..1119 | 2..1106 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:49 Download gff for
FMO06494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6125-RA | 1..1119 | 2..1106 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:49 Download gff for
FMO06494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15404642..15405306 | 127..791 | 99 | <- | Minus |
| 3R | 15405380..15405506 | 1..126 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:44:44 Download gff for
FMO06494.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11230364..11231028 | 127..791 | 99 | <- | Minus |
| arm_3R | 11231102..11231228 | 1..126 | 97 | | Minus |
