FMO06495.5prime Sequence
1139 bp (1005 high quality bases) assembled on 2008-09-15
> FMO06495.5prime
CAGTCGACATGAATCGGTCCGAACCGATTCCCATTCGACGGGACCGCTCT
TTTGACAGTGTGATCAACCGCCTGCTCCGTATGAGGTCCCAGAATCATGA
GAGCTTTCGCGCCGCCATGTACAATTTCCTGATCGCCGCAGGAGTTGCGG
CATTCGTCGCTGTGTGCTTCATTCTTGGGCCCTTCGTCCGTCCATTGCTG
TGGGCCTTCCTCATGGGCGCCGTGCTCTTTCCATTCAAGCGACGTTTGGC
GGAGAGCGTAAACAGTTGGTTTCACCGCTTGGAGGTGCGCGACTCCAATG
TACTGGTTTCGATCTGCCTATCGCCGCTGGAAGCCACAGAGCATTGCGGG
CGGTTGCTGATCGGGTGGCTCTGCGAACACTGGCAACTCCTCCTGGCCGG
ATGCGGAGTGGCCGGGTGCATTAAGCTGCTGGTTTTATATGCACCGAAGG
GTTTTCTGCTGGCCATCTGGCATTGGATCACCTTTTCCCATGGCTTGTTC
GTTCAAATTATTGGATTCCTCAACGTATACGTGCTCATTTCCTTGATCGT
GGTCTACTTGAGCTGCGTCCACTTCTTTTGGAGGCCAGAGAATAGTGCCC
ACTTCGTGGTCGCCGGACAATCCATGTGGATAGCTGTAGCGGGCTATCTG
AGTAGCTTTCTTGGCGCCCTGCAGGTGCCGGTATTTCTACTGGTTATGAC
CTATGTAACAGCATCTACGGCATATCATCTGCAAACCCTAGATGATTCGG
GATCTTATCTTCACCGCCTGCAAAAGTTGTTCGACAAGAACGATTTTGAG
CGATCGCTAAGCAACTTCAGCATTTGTGGCAGACCAGGCAACGAGCCACT
GAGTCCGGGGCTGCAGTCGGATGTGGAGGATGTATCGTTTAAGTGACACT
GTCGACTCGACGGACACGTTTGATGTCAAGCCAGAAACCGGAGGTCCCAG
TCACAGAGCGAACAATTCTTTAGGCTCCTTTTTTATGCCTGCTTGGGCAC
ATTTCCTTTTATCGCACGGGTGATGTTTACCCTAGCGGCAATCCCAGTAT
TCTGCTTCTTATTTCCACGTAGGAAGTATACGGGATTTACTAAATTTGTT
TGGGACAAATACCGAGTTACCAGCTGGTTCTAGGGCAAT
FMO06495.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2698-RI | 3147 | CG2698-RI | 262..1365 | 9..1109 | 5085 | 98 | Plus |
| CG2698-RH | 2976 | CG2698-RH | 262..1365 | 9..1109 | 5085 | 98 | Plus |
| CG2698-RG | 3138 | CG2698-RG | 262..1365 | 9..1109 | 5085 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8001922..8002458 | 9..545 | 2640 | 99.4 | Plus |
| 3R | 32079331 | 3R | 8002553..8003132 | 533..1109 | 2250 | 94.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:53:58 has no hits.
FMO06495.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:18 Download gff for
FMO06495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2698-RG | 254..1373 | 1..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-15 13:57:08 Download gff for
FMO06495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2698-RB | 256..1375 | 1..1115 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:11 Download gff for
FMO06495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2698-RG | 254..1373 | 1..1115 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:11 Download gff for
FMO06495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8001914..8002446 | 1..533 | 99 | -> | Plus |
| 3R | 8002554..8003140 | 534..1115 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:18 Download gff for
FMO06495.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3827636..3828168 | 1..533 | 99 | -> | Plus |
| arm_3R | 3828276..3828862 | 534..1115 | 95 | | Plus |
