FMO06496.5prime Sequence
1104 bp (971 high quality bases) assembled on 2008-09-15
> FMO06496.5prime
CAGTCGACATGGCTGCCCTACAACGGAAGCTGGTGCACAAGCAGTTCAAC
TCGCCCATGGGCCTCTATTCCCAGGAGAACGTGAAGGCCACATTGAACCG
CGAGCTGAAAGCCTTCGGCGGCGAGGGGATTGAAGTCGACGATCAAATAA
CGAAGCCCCTGAACTTGGCCAACTCGGCCGTTCTGCGCGCCGTCGAAGAG
GAAGAACAACAAGCCAAATGTGGCTACAAGCGTGTGGCCTGGCCACCGGC
CTCCGAGGAGCGGATCATCCGGGAGTTCACCCCCCAGCCGCAGACTCAGA
GTCCGGCTCCCGGTGCCGGAGGCTACTATCCGCAGGCCCACGCTCCCACA
GCAGCAGCTGCCGCTCCACCTCAGCAGCAGCAGTACGGTGCTCCGTCTTA
CGATGGCCAGCAGCCTGGAGCACAGTGGCAACAGCAACAGCAGCAGCAGC
AGGTTCCGCAGCAGCAGTATCAGCCTCAATCGCAGGCTCAGGCGCCCTAT
CAGCCACCACAGTGGAACCAGCCGCAGCAGCAGCAGCAGCAGCCATCGTA
CCAGGCTTCACCGTACCAACAGCAGCAACAGCAACAGCCATCCTATTACC
CACAGCAAAATGGTGGCTCGACCTATGCTCAACCCCCATACAATTCTTAT
TCGCAGCCCCAGTTGCCCTACTCGCAGGATCAGACTGATCTGCAGCAGCA
GCAACAACAGCAGCAGCAGCAGTATCCGGGAGCCTACGCTGGCCAGGATA
GCTACCGGGGCGCCAGTCCCGGCATCATCACCCCTGCGCAAGGAGGCTCC
AGTTCAGCCAGAGCCCTGCACCAGTCTACACTTCGCAGCCAGCCCGCCGT
CAGTTATCAGGGAGGCAGCAAATTGCGCGGAGATTAGAAATGGCCACCAC
CGAGTACAAGGAGGCCGCGGCTCGCGAGAACGAGACCGACGCCAGTTGGC
GTTGGGTTCCCGTCTGCCGTCCAAGAGAGTAACCGGGACTTACAACACCT
TCTTTGCCAGCACAGTTGAACAATGCTAATCCCAGCTACAAGAGCCTCCG
GCCACGCAGCACATTTTCGGCCAAGCTTCATGACCATATCGTTGGGGCGC
GGAC
FMO06496.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:54:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG43897-RH | 2802 | CG43897-RH | 407..1475 | 9..1075 | 4845 | 97.7 | Plus |
| CG43897-RG | 3056 | CG43897-RG | 664..1729 | 9..1075 | 4790 | 97.4 | Plus |
| CG43897-RF | 2799 | CG43897-RF | 407..1472 | 9..1075 | 4790 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:54:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9832191..9832680 | 370..862 | 2285 | 99 | Plus |
| 3L | 28110227 | 3L | 9830633..9830785 | 222..374 | 765 | 100 | Plus |
| 3L | 28110227 | 3L | 9820441..9820560 | 9..128 | 600 | 100 | Plus |
| 3L | 28110227 | 3L | 9824545..9824641 | 127..223 | 485 | 100 | Plus |
| 3L | 28110227 | 3L | 9832738..9832850 | 861..972 | 390 | 95.6 | Plus |
Blast to na_te.dros performed 2014-11-28 21:54:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6916 | 349..545 | 240 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2282..2673 | 309..714 | 239 | 57.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..7009 | 328..590 | 238 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6777..7078 | 419..722 | 209 | 57.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2385..2632 | 346..610 | 158 | 56.4 | Plus |
FMO06496.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:07 Download gff for
FMO06496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RH | 399..1479 | 1..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:48 Download gff for
FMO06496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33205-RH | 395..1475 | 1..1082 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:35 Download gff for
FMO06496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG43897-RH | 399..1479 | 1..1082 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:35 Download gff for
FMO06496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9820433..9820559 | 1..127 | 96 | -> | Plus |
| 3L | 9824546..9824640 | 128..222 | 100 | -> | Plus |
| 3L | 9830634..9830785 | 223..374 | 100 | -> | Plus |
| 3L | 9832196..9832679 | 375..861 | 98 | -> | Plus |
| 3L | 9832739..9832866 | 862..986 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:07 Download gff for
FMO06496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9825839..9825966 | 862..986 | 93 | -> | Plus |
| arm_3L | 9813533..9813659 | 1..127 | 96 | -> | Plus |
| arm_3L | 9817646..9817740 | 128..222 | 100 | -> | Plus |
| arm_3L | 9823734..9823885 | 223..374 | 100 | -> | Plus |
| arm_3L | 9825296..9825779 | 375..861 | 98 | -> | Plus |
