FMO06501.5prime Sequence
732 bp (134 high quality bases) assembled on 2008-09-24
> FMO06501.5prime
CGAAAGATGAGCAATAACTACAACGACGTGCCATTCGGCATCCGGGCTGT
GCAGCGGCTGTCCCGACAATGCTGCACCCGCTTCCATGCCCGCAGAGATT
TGCTCAACAAGATGTCAGTGTTTGTGCTAACTTTCCTGGCCTACGCCTGC
TATCACATGTGCCACAAGCCCATCTCCGTAATCAAGTCGGTGCTGCAAGG
AAACTGTTCCACAGCGCTGGCTGCATCGGGTCAGGATTGTGGATATGCGC
CCTTTGATGTTCCCGATGCCACCACACTCTTTGGAATGCTGGACTCGGCC
TTCCTCTTCTCCTATGCCATCGCTATGTTCGCTTCTGGTTTCGTGGCGGA
ACGCGTTTCCCTGCAATACTTCTTGTCCATGGGCATGATCCTCAGCGGAG
TGTTCACTTACATGTTCGGAATAGCTCGCACCTCCAATATCCATAGTTTG
TGGAATTTCATAATAGTGCAAATATTCGCTGGATCTTCCAAACGACCGGA
TGGCAGGTGAAGTGGACCCTCGTGGGGTCGTTGGTTTGGAAATCGAAACG
AGAGCTCATTTTTGGTATAAGAACAGTCATACGACTATTGAAAACATTCT
TGGCAGCTGATAACATGCATAATGGGTATCCATTGGCGCTGTCGTTTGTG
GTACCCGGAATAATCTTGCAGCCGTTGGATTTTTACTCTTCTTTTCAGAG
GAATAGCCGGAGAATTGTGGGCTGTATCCACA
FMO06501.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MFS16-RD | 2281 | CG10069-RD | 272..1014 | 1..732 | 2940 | 94.4 | Plus |
| MFS16-RC | 2563 | CG10069-RC | 554..1296 | 1..732 | 2940 | 94.4 | Plus |
| MFS16-RB | 2399 | CG10069-RB | 390..1132 | 1..732 | 2940 | 94.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:47:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21283542..21283989 | 256..695 | 1355 | 92.4 | Plus |
| 2R | 25286936 | 2R | 21283333..21283482 | 107..256 | 720 | 98.7 | Plus |
| 2R | 25286936 | 2R | 21283109..21283212 | 1..104 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:47:59 has no hits.
FMO06501.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:21 Download gff for
FMO06501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MFS16-RB | 390..1131 | 1..731 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:33 Download gff for
FMO06501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10069-RC | 554..1295 | 1..731 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:47 Download gff for
FMO06501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MFS16-RB | 390..1131 | 1..731 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:47 Download gff for
FMO06501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21283109..21283212 | 1..104 | 100 | -> | Plus |
| 2R | 21283331..21283482 | 105..256 | 98 | -> | Plus |
| 2R | 21283543..21284028 | 257..731 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:21 Download gff for
FMO06501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17170614..17170717 | 1..104 | 100 | -> | Plus |
| arm_2R | 17170836..17170987 | 105..256 | 98 | -> | Plus |
| arm_2R | 17171048..17171533 | 257..731 | 92 | | Plus |
