FMO06502.5prime Sequence
1216 bp (519 high quality bases) assembled on 2008-09-24
> FMO06502.5prime
CAGTCGACATGCCAAGACATTCGAGCACAATGAGCCGCCTTGTTCTGCCC
CTGATCTTCAGCATTTTGCTGGTCAGTAAGCCATCGCCATCACAGGCTCA
GGATGAATCCCTGGCTGGCAGTTTCCTATCAGGTCTTTTGGACACCATAA
CGAGCACCGCAGACTCCAAGGATTGCCCTGGAGTATGTGTCCACACTTTG
GCAACTTTAATTTGCTACGAAGTTCTAGACGATGTGGCTTGTCCTTCGCC
CAGCATGAAATGCTGCATAGAAAATGCTCCAGCCGGCAAGAATGCCACTG
CTGTGAGAGCAACCACAACGCCTAAAACCACAACCACTGCTAGCACCACT
ACCACCCAGAGAACCACCACCACGGTGGCCACTACTAGCACCACTAAGAG
AACCACCACAACGAGCACCACTCCAAAACCAAAACCAAAGCCACAGACCA
AGCGACCTGCCACTAGCTCCACCACAAAAGCCACTGTGGCCACCACAAAG
AAACCGAGCACCACCAAGAAAGTGGCTACTGCCAAACCCAAGGACAAGGA
GGAGGCCACCAAGGCCGATGATGCAAATAAAGACTGCACTGGAGTTTGCG
TGGCCGATCGCATAGCGGAGTACTGTGAGGCCTATTTGACCAGCGATGGA
CTGTGCAAGGAACGCACCAAGTGCTGCTTCTCCCTGGGATGATTATTCCA
ATGGCAAGCTGCCCCAGGATATCTATATTCCACCCTAACATATGAGAACT
TGAAGCCCAACCAGACACTGTCCGAAAAATCGGCTCCCGCCAAAGAGTTC
CCAGTACGTTCCACAACTCCACTTACTACCACCACCAGCACTACCACAAC
ACTCGAAACCGGATATAATAAACAAAGGTTTCCCGAAGCCCACCAAACAC
AAAAGGCATCCCGACCACCACATGGACCGGAGGCACCCAAGGAAAGGTGC
AACAAGAACCGGTGAAGATGGCCAGGAGATGAACCCCCCCTGGTCAACAG
CTGAAGTCCGGATCAAGTCGGGTCAGGTGTTTAAGGATTCCCAGGGCAAG
GCTCGAATGGATATAATTGCCAATTCTCTCGTGATGAACTCCAATCCAAA
TGCTTTTCTGGTACCCGGAATAAAAATGCTTTTGTGGGTGAAACGGGAAG
TGTGCCTCCGGAAGGAACAACACCCTCTCCTTCTCTAAGGGGCTTCCTCA
CCCCACCCGAGGCTAG
FMO06502.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mas-RB | 3657 | CG15002-RB | 185..1245 | 9..1070 | 4175 | 93.8 | Plus |
| mas-RC | 3654 | CG15002-RC | 185..1242 | 9..1070 | 4120 | 93.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4164887..4165183 | 577..281 | 1455 | 99.3 | Minus |
| 3L | 28110227 | 3L | 4165243..4165394 | 282..131 | 760 | 100 | Minus |
| 3L | 28110227 | 3L | 4164648..4164799 | 732..580 | 655 | 96.7 | Minus |
| 3L | 28110227 | 3L | 4165463..4165588 | 134..9 | 630 | 100 | Minus |
| 3L | 28110227 | 3L | 4164403..4164584 | 922..737 | 395 | 88.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:37:02 has no hits.
FMO06502.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:33:23 Download gff for
FMO06502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mas-RB | 185..1098 | 9..927 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:53 Download gff for
FMO06502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mas-RB | 182..1095 | 9..927 | 96 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:42 Download gff for
FMO06502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mas-RB | 185..1098 | 9..927 | 96 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:42 Download gff for
FMO06502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4165465..4165588 | 9..132 | 100 | | Minus |
| 3L | 4164644..4164799 | 580..736 | 95 | <- | Minus |
| 3L | 4164885..4165181 | 283..579 | 98 | <- | Minus |
| 3L | 4165243..4165392 | 133..282 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:33:23 Download gff for
FMO06502.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4164644..4164799 | 580..736 | 95 | <- | Minus |
| arm_3L | 4164885..4165181 | 283..579 | 98 | <- | Minus |
| arm_3L | 4165243..4165392 | 133..282 | 100 | <- | Minus |
| arm_3L | 4165465..4165588 | 9..132 | 100 | | Minus |
