FMO06503.5prime Sequence
1243 bp (838 high quality bases) assembled on 2008-09-24
> FMO06503.5prime
CAGTCGACATGACACAACACGAAAATCAGCAAGCCATTCTCAGCAACTTT
GTGCTGGAAATGTGTGAAGGAGTGGATCGACTGATGCGGGATCAGGCCGA
ACTGAAGGTTCACCTCAACGAAATTCTAAATGAGAACCGCCGGCTGGACA
TCGAATTGGCCAAATGCAGGAGCATCTTGGTTAGCGGCGATTACCAGGAG
CTCAAGCATCGCCTTCAACTCAGCAACAAGGCTTTGGACGCGTCCAAGAA
GCAGGTGGATGAGCTTATCAAGGAACGGAACAGCCTGAAAACCATGCATG
ACCTCTCCAAACAGACCATCGAAACCATGGAGATGGATCTTAAGAATTAT
CGCGTCCAATTGAAAATGTCTGGAGATGACCAGGTCATACAGCGGTACTC
GAAGATCGTCAAAGTGCTGGAGGCAAAAGTTGAGGACCAGCAGAAGGAGA
TACGCACGCAGGCGGAGACCATAAAGGCCCTGCACGATCACAAGCAGCAC
AGCGGATTGCAACTCCAGCAGCTGCATCCTCAACTGCAGGATAGCGAGCA
GAGTCAATTCAAGGTGTCCATCCTGCAGAAGCAGCTTAAGGAGTACGAAC
TATCGCTGAGCCACACCCACAATTTGCTCATGGAGAGCACAAGACGGGAA
ACCGCCGCCATGCGCAAGCTCGAGGAGGCTATCATACTCAGCGAAGAGGC
AAACAAGGAGAAAATAGATGCCACAAAGCTGGCCGAGACCTACAAGGAGG
AGATGACCCACCCTAGCCTCCAATATCGGTACCATAATGGGATGAGGCCT
CCACACGCGTCGACGTTGAAGTGGGGCCATCTGAAGAATATTGCTCAGCA
AAGGACATTATAATTACCACCATAAAGGAAAAGCTGAAAAACTGGCTGTC
GATCATAAGTCGGTGGTGCACATGCTGGAGACCCGAGCAATCGCCTGGAG
CCAAAGTACAGGAGGTGCTGAAGCAGAAACGATAAGCTTGGAAGCCGAGT
TGGAGGCCAACTGGCCGGCGACATTTGCCGAACTGGAGCGATCCGCTACC
TGAGCTTACGGGGGGGATGCCGAGAATGCCAGGATAAAAATGTACCTATA
GTCCCAATGGATGCCTGCATTATGGATTCACAGAAAATGAGGAAAACACC
GCGAGGGGCATGGAGGAATTCCGCACCTTCAACTCGAAAGTTCAGTTAAG
GAGAGAAAACCTCTGTCGTGTCTGTGGTGAAAAACAATACTGC
FMO06503.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6569-RA | 1428 | CG6569-RA | 77..1233 | 9..1167 | 5020 | 96.6 | Plus |
| CG6569-RB | 1492 | CG6569-RB | 174..1297 | 42..1167 | 4855 | 96.5 | Plus |
| CG6569-RC | 782 | CG6569-RC | 77..452 | 9..384 | 1880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21866767..21867266 | 883..382 | 2195 | 97.6 | Minus |
| 3R | 32079331 | 3R | 21867403..21867746 | 385..42 | 1720 | 100 | Minus |
| 3R | 32079331 | 3R | 21866510..21866705 | 1085..887 | 525 | 91 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:06:24 has no hits.
FMO06503.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:55 Download gff for
FMO06503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6569-RA | 77..1249 | 9..1180 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:55 Download gff for
FMO06503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6569-RA | 261..1433 | 9..1180 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:55 Download gff for
FMO06503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6569-RA | 77..1249 | 9..1180 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:55 Download gff for
FMO06503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21866510..21866709 | 884..1085 | 91 | <- | Minus |
| 3R | 21866767..21867264 | 384..883 | 98 | <- | Minus |
| 3R | 21867405..21867744 | 44..383 | 100 | <- | Minus |
| 3R | 21867809..21867843 | 9..43 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:55 Download gff for
FMO06503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17692232..17692431 | 884..1085 | 91 | <- | Minus |
| arm_3R | 17692489..17692986 | 384..883 | 98 | <- | Minus |
| arm_3R | 17693127..17693466 | 44..383 | 100 | <- | Minus |
| arm_3R | 17693531..17693565 | 9..43 | 100 | | Minus |
