FMO06504.5prime Sequence
623 bp (623 high quality bases) assembled on 2008-09-24
> FMO06504.5prime
CGCACTCGCGACTCGCCCAGGTGGGCCAGGAGCACCTGCTCAAGTTCTGG
CCGGAACTAACGAATGACGAACGCATCGACCTGGTGCGGGACATCGAGGA
GCTGAATCTGGACGAGATCAAGCTGTATTTCGACCGCGCCACGGTCTCAA
TGAACGAGAATGGCATCAAGCTGGACGATCGCCTGCAGCCGCTGCCCGAG
GGCAAGCTAATCTCCATTGCCAGGGCGCCGCTGGAGAAATTGGACGCCTA
CCGAGACGAGGGTCCCCTCCAGATCAGCAACGGACATGTCGCTGTGCTGC
TTATGGCAGGCGGACAAGGCACACGACTTGGCTTCGATCATCCCAAGGGA
ATGTACGATGTGGGACTGCAGTCTCGAAAGACCCTGTTCCGCATTCAGGC
CGAGCGAATCCTGAAGCTGGAGGAGCTCGCCCAAGAGGCGAATGGAAAAC
GTGGACACATCACTTGGTACATCATGACGTCGGAGCACACGGTGCAACCT
ACATACGACTACTTTGTGGCCAATAACTTCTTTGGCCTGAAGGCGGAGAA
CGTACTGTTGTTCGAGCAGGGATCACTGCCGTGCTTTGAATACGATGGAC
GCATCATTCTGGACGAAAAGCAT
FMO06504.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:37:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mmy-RB | 1921 | CG9535-RB | 183..804 | 2..623 | 3080 | 99.7 | Plus |
| mmy-RA | 2030 | CG9535-RA | 345..966 | 2..623 | 3080 | 99.7 | Plus |
| mmy-RD | 2064 | CG9535-RD | 326..947 | 2..623 | 3080 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:37:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6471327..6471644 | 319..2 | 1575 | 99.7 | Minus |
| 2L | 23513712 | 2L | 6469655..6469961 | 623..317 | 1520 | 99.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:37:05 has no hits.
FMO06504.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:33:26 Download gff for
FMO06504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mmy-RD | 324..947 | 1..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:56 Download gff for
FMO06504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mmy-RA | 358..981 | 1..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:35:45 Download gff for
FMO06504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mmy-RD | 324..947 | 1..623 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:35:45 Download gff for
FMO06504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6469655..6469959 | 319..623 | 99 | <- | Minus |
| 2L | 6471328..6471644 | 1..318 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:33:26 Download gff for
FMO06504.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6469655..6469959 | 319..623 | 99 | <- | Minus |
| arm_2L | 6471328..6471644 | 1..318 | 99 | | Minus |
