FMO06506.5prime Sequence
1225 bp (1050 high quality bases) assembled on 2008-09-24
> FMO06506.5prime
CAGTCGACATGGATGAAAAAGATAAAGCTCAACACAACATGATATCCAAC
CTACCACTTTTGTTTGCGAACGGATATCCAACATCCCTAGAAAAAATTAC
GGAGTCCCAGTTAGAAAATTTTATTCCCTTCATGGTGCAATGCTCTTTAG
GACACATAAACTTACCAAAGAAAATAGATTGCAGTGAACCAGAATGGTGG
CCCGAAAGCGCTCCTTTCGAGATTCCGCTCAAAAAGCCGAAAGCATTTGT
TGGGAATTGGATGGAAAAAATGAAAGAAATTGTGGTTATATGCTATCAAT
TTCACAAAAGCTTATTTCTATTAAGATTTTGTAATGATTTAGCTGCGTAT
GAACACGCGAGCTTAAGATTCATAAACAATTATAACTCAACAACTTCATT
GTATGACAGGAGAAACAACAAACTGTTGGTTACATTTCGAAATGAAAACA
TGTCATATGATAGACAACAAAAGAACAGAAAGTGCTTGTTGCTGCAAAAG
AACAACAGTTCCATTAGCGAAAACGTACAGCATATGATGGTTGAGCCACC
ACCTTTTGATATCTACCTATGTGACAACTGTGATGCCGAACTTTATTCTA
AAGAAGCTATACTCGAACACGAAAACATTTGTTGCATGGAGGATGACGTT
ATACTTTGTGATTCCCCTGAGCCAGATAACAAAAGTGATGGGAAAAACGA
AGATATCGAACAGCGCAACGCCTTTCTCTTAAACTTTAAACTGCAACCCA
AATTCTCCGATAATAGTTTATCTAAAGAGAAACAGAAAACATATTCATTC
AGCGAAGAAACATCAACGGGAAACATCAAACAGAAAAGAGGCGTTTACCA
TCGCGGAGAAATCGAACAGTTCATTCGTTTAGTAGTGTTCGTTTATCCCA
ATATCATCACCTGCAGGACAGCAATTGTTAAATCGACAAAACAAACAATA
TCAATGGATTATATTGGCGAAAGACAGGAACGCCTGGAACCGCTTTTGTT
ACACCTCATTGATCAATAAATCATACCAGCAAAGTATTTTGAAAAAAAAA
CAAAACTACAGTCCATGTAATTTAAAAGTCACATGAACCCAATATCCATA
TATCTTTCCGCGGCTTCACTGTACGCAAGACCCTACTGAAACCTTTTGTT
TTGAACTCGTATAACATTGCCCTCCATTACGTCGAATGGAAAAATTGCGA
ACACGCTTATATGAGAGAAAAATCA
FMO06506.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:24:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5694-RB | 2388 | CG5694-RB | 416..1584 | 9..1158 | 5120 | 96.9 | Plus |
| CG5694-RA | 2132 | CG5694-RA | 160..1328 | 9..1158 | 5120 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:24:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10228684..10229126 | 1054..615 | 1760 | 96.6 | Minus |
| 2L | 23513712 | 2L | 10229705..10229950 | 254..9 | 1230 | 100 | Minus |
| 2L | 23513712 | 2L | 10229414..10229612 | 452..254 | 995 | 100 | Minus |
| 2L | 23513712 | 2L | 10229184..10229347 | 615..452 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:24:15 has no hits.
FMO06506.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:54 Download gff for
FMO06506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5694-RA | 151..1276 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:58 Download gff for
FMO06506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5694-RB | 405..1529 | 1..1114 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:00:20 Download gff for
FMO06506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5694-RA | 151..1276 | 1..1114 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:00:20 Download gff for
FMO06506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10228616..10229126 | 615..1114 | 95 | <- | Minus |
| 2L | 10229185..10229346 | 453..614 | 100 | <- | Minus |
| 2L | 10229414..10229611 | 255..452 | 100 | <- | Minus |
| 2L | 10229705..10229958 | 1..254 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:54 Download gff for
FMO06506.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10228616..10229126 | 615..1114 | 95 | <- | Minus |
| arm_2L | 10229185..10229346 | 453..614 | 100 | <- | Minus |
| arm_2L | 10229414..10229611 | 255..452 | 100 | <- | Minus |
| arm_2L | 10229705..10229958 | 1..254 | 99 | | Minus |
