FMO06507.5prime Sequence
629 bp (629 high quality bases) assembled on 2008-09-24
> FMO06507.5prime
CAGTCGACATGGAGACTCTACTGGGTATCAAGGGCCCTGACTTCGTGATG
CTGGCGGCGGACACCACCCACGCCCGATCCATTATAGTGATGAAAGAGGA
TCAGAACAAAATCCACAAGGTGTCGGATAGTCTGCTTATTTCAACCGTCG
GCGAATCGGGCGACACGGAGCAATTTACCGAATTCATTTCGAAGAACATA
GCGTTGTACAAGATGCGCAATGGCTACGATTTAAGTCCACGTGAATCGGC
TCATTTTACTCGCAAGAATCTGGCCGAATATCTTCGCAGTCGCACGCCCT
ACCAAGTGTTCATGTTTGTGGCCGGCTACGATCCCAACGCGGGTCCGGAG
CTCACCTTCATTGACTATTTGGCCAATGCACTGCCTGTGAATTACGCCGG
TCATGGCTATGGTGCGATCTTCGCATCCAGCATCTATGACCGATACTGGC
ACCCCAATATAACCCAGGCGGAGGCCTACGACGTCTTCAAGAAGTGCATT
GCCGAAATCCAGAAGCGCCTGGTCGTCAACCTCAAGAACTTCACCGTCGC
CGTCGTGGACAAGGATGGTGTGCGAGATTTGGAGCCAATCAGCGCTGCTA
GCCTGGCCGCTGCAAGCTTTCTAGACCAT
FMO06507.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosbeta4-RB | 815 | CG17331-RB | 99..703 | 7..611 | 3025 | 100 | Plus |
| Prosbeta4-RA | 774 | CG17331-RA | 99..703 | 7..611 | 3025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16731292..16731578 | 611..325 | 1435 | 100 | Minus |
| 2L | 23513712 | 2L | 16731643..16731869 | 325..99 | 1135 | 100 | Minus |
| 2L | 23513712 | 2L | 16731943..16732035 | 99..7 | 465 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:46:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy12 | 10218 | gypsy12 GYPSY12 10218bp | 3255..3304 | 395..346 | 106 | 68 | Minus |
FMO06507.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:29 Download gff for
FMO06507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta4-RA | 92..708 | 1..619 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:59 Download gff for
FMO06507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17331-RA | 88..704 | 1..619 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:37 Download gff for
FMO06507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosbeta4-RA | 92..708 | 1..619 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:37 Download gff for
FMO06507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16731287..16731577 | 326..619 | 98 | <- | Minus |
| 2L | 16731643..16731868 | 100..325 | 100 | <- | Minus |
| 2L | 16731943..16732037 | 1..99 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:29 Download gff for
FMO06507.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16731287..16731577 | 326..619 | 98 | <- | Minus |
| arm_2L | 16731643..16731868 | 100..325 | 100 | <- | Minus |
| arm_2L | 16731943..16732037 | 1..99 | 95 | | Minus |
