FMO06508.5prime Sequence
623 bp (608 high quality bases) assembled on 2008-09-24
> FMO06508.5prime
CCCTGGAGCCCAGCCTGCAGAATCTCGTCGAGCAGGACTCCCTCAAGTGG
ATCTTCGTGGGCGGAAAAGGCGGCGTGGGCAAGACGACTTGCAGTTCTAG
CCTAGCCGTTCAGCTGTCGAAAGTGCGCGAATCCGTGCTAATCATATCCA
CAGATCCGGCGCACAACATATCGGATGCATTCGATCAGAAGTTCACCAAG
GTGCCGACAAAGGTAAATGGCTTTGACAACCTGTTCGCCATGGAAATCGA
TCCAAATGCCGGTCTCAACGAGCTGCCCGAGGAGTACTTCGATGGCGAAA
ATGAGGCGCTGCGCGTGAGCAAGGGCGTCATGCAGGAGATGATCAACGCC
CTGCCCGGCATCGACGAGGCGATGAGCTATGCAGAGGTTATGAAGCTGGT
CAAGGGCATGAACTTCTCGGTAGTCGTCTTCGACACGGCGCCCACGGGAC
ACACGCTGCGTCTGATTGCATTTCCCCAGGTGGTGGAGAAGGGGCTGGGC
AAGCTGCTGCGGCTCAAGATGAAGGTGGCGCCCCCTGCTGTCAAGTTCGT
CTCCATGCTGGGCATGGCTGATGTGAACGCTGACACACTCTCCCCAGAAG
CTGGACGACATGCTGCGCGTTAT
FMO06508.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1598-RA | 1259 | CG1598-RA | 126..747 | 1..623 | 3045 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7538803..7539214 | 623..211 | 1920 | 99.3 | Minus |
| 2R | 25286936 | 2R | 7539295..7539416 | 214..93 | 610 | 100 | Minus |
| 2R | 25286936 | 2R | 7539478..7539571 | 94..1 | 470 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:06:26 has no hits.
FMO06508.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:16:20 Download gff for
FMO06508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1598-RA | 126..747 | 1..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:38:01 Download gff for
FMO06508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1598-RA | 126..747 | 1..623 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:50:09 Download gff for
FMO06508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1598-RA | 126..747 | 1..623 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:50:09 Download gff for
FMO06508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7538803..7539212 | 213..623 | 99 | <- | Minus |
| 2R | 7539297..7539414 | 95..212 | 100 | <- | Minus |
| 2R | 7539478..7539571 | 1..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:16:20 Download gff for
FMO06508.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3426308..3426717 | 213..623 | 99 | <- | Minus |
| arm_2R | 3426802..3426919 | 95..212 | 100 | <- | Minus |
| arm_2R | 3426983..3427076 | 1..94 | 100 | | Minus |
