FMO06511.5prime Sequence
1116 bp (973 high quality bases) assembled on 2008-09-24
> FMO06511.5prime
CAGTCGACATGGAATATCAGAAACGCACTCCCAAACGCCGCTCGTTCATT
GAGCGGGCGCAGAAGGAAAGCGAGGAGCTTGTGCGAACAATGGGCGGAAG
CCTGGAGCTGGCGGGCGGGCGGCGGACGCGGTCTAGCACTCGAGGAACGC
CGACGCGAGCCGCCGAGGCAGTGACGCCGCCACCCAGCAAAAAGGCGCGC
ACTTCGCCGGCCTCGGCCACAAAGGCCAGTGCAGGAAAGGGACGCGGAGC
ACGTAAGCTAGACGTAGGCGCTGATGAGCCCGAGCCTGAGCTGGAGAAGG
AGAAGGAGAAGGTACAGACCTCGGTCAAGGGAAAGGGAGCTGTCAAGAAG
GACAAGAAAGAGGTCAAGAAGCAGGAGAAGGCAACTGAGAAATATGCGCC
GGAGGAGGCAAAGGAAGATGTAGCTGAGGCAAAAGAGGAAGACGCCAGTC
CCGCCGGGGTCCAGGACCAACCGGATGGTGTGGAGAATCTTCCTTCAGTG
GCGGAAGCGAAGCAGAATCATGTCGATGAAGTCAAACCAATATCAGAAGA
ACCTGGGAATTCAAGCGAAGAGGTGCCAAAAGCTGAAGAGCCCCTCAAGT
CGAGCGGAGAAACGTCGGAGAATGGAGCCGCTACAGAGACTGCCGCTGCA
CCTAAAGAACCTGCTTCTGTTATGGATGTGGACGAAGATGAGACGCTCGT
CGAAAACACACCATCCGCAAATAAAGAAAAGGCATTAGATGACGAAAAAG
AACCAGAACAGAAGTCAGAGGAACATGCAGCAGCAGTTTTGGAGTCCAAG
GAGCAAAATGAGCCAGCCAAGGAGCCCACACCAGAACCTATGGGAAGTGA
CGGAAGTTCGAAGGGCAGTTCGGACACCGCTCAAGTAGACACCACAGCCA
TCGAAAACGTTTCTGCGCTCTAGAAACAGAAGCAGCAGCAAAGAATTACG
GAGTTCTAGCATGATGTGGTGGAAGTGGTCCAAGAAGCAAAAGAAACAAG
TTAGAATGGCCCGCTTTCGAGCCCATGAAGCCGGAGAGCACTGTAAGTCG
CGAATAGAGCTTACGGAAACAGCACCGTGGTTGGACTGACGAAGGAAGCC
GCCAGCAAGCGATAAG
FMO06511.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1910-RC | 2628 | CG1910-RC | 46..1150 | 9..1107 | 4860 | 96.8 | Plus |
| CG1910-RD | 2698 | CG1910-RD | 128..1220 | 21..1107 | 4800 | 96.8 | Plus |
| CG1910-RA | 3015 | CG1910-RA | 445..1537 | 21..1107 | 4800 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31749578..31750358 | 333..1107 | 2960 | 94 | Plus |
| 3R | 32079331 | 3R | 31749204..31749522 | 18..336 | 1595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:05:06 has no hits.
FMO06511.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:39:36 Download gff for
FMO06511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1910-RC | 46..1015 | 9..978 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:31 Download gff for
FMO06511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1910-RC | 46..1015 | 9..978 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:06 Download gff for
FMO06511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1910-RC | 46..1015 | 9..978 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:06 Download gff for
FMO06511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31749202..31749521 | 15..335 | 99 | -> | Plus |
| 3R | 31749581..31750223 | 336..978 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:31 Download gff for
FMO06511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27574924..27575243 | 15..335 | 99 | -> | Plus |
| arm_3R | 27575303..27575945 | 336..978 | 98 | == | Plus |
