FMO06513.5prime Sequence
1221 bp (999 high quality bases) assembled on 2008-09-24
> FMO06513.5prime
CAGTCGACATGTCGCAGCAAGTGTTCTCGGCGCATCCAGCGCTGGCGGTG
GACCAGCTGCAGCAGGCGGAACAAGAGGAGCACAATACCAGTAGTAATCA
TCACCAGCAGAGATCGGCGACACAGAGCCGCCGGCATACCAAGGCCGCAC
CCAAGAAGTTCACCCTGAGCAGGAGTTGCGCCGGCGGAGGATCGGGAACC
CTGAGCGGAGTCCACCAGCAAGTCAAGCCCAGTCCTTCAAACCCCGCCAT
CAGTCCGGAGTGCAGGAAAACACTGCCCGTGCGAACAAACTATGCGGCGG
TGGATGACGACGATGACATCGAGTGCGAGGATGTGGACGAGGTGAACTTT
GGCCAGCAGGAGAAGGAGCGGGAGCGGGAGACCCGGCAACCAACCAAAGA
CTGTGGCACCGATGAGACGGATCATGTGCAGCAGCGCCACAAAAACACAA
TGACGACCTCGGCGACGGCGGCGAGCAGGCACCACCACCAGGACGGAGGA
GGAGGTGACCAGAGCGATCTGAGCAGCGTGATCAGCTCGCCGTCGGTCAG
CACAGTGTCCTCGCCCCTCTCCACGCCCACCAGGCTGCCACAGGCGCTGC
AACAGCAGCTACACTGCTGCCAGAAGTCCACGGGCATGGAGTCCCGGGCG
AGAACATCTCCGCAACAGATCCAGCATCCGCACAGACAGCACCACCAGCA
GCAGCACCATCACCACCACCACCATCACCACCTCACGGCAGCGGGTTGTA
CGGGCGGAGGAGGAGGAGGCGGTGGCTCTGGAGGATCGGGATCCTGCAAG
CGAAGAAGCTCGATCCCCGACTGAATCCCTCGCCCTATCGCCAGCTATTG
CCCATCGCCCTGTGCCTGCTCTCCTTCGCGGCAGTCTTCGCCACATTTAT
TAGTTTACATGGAAACGACAGAGATTCGGCCATCAGCAGTTTCGGCTAAA
CATGTCCGCGCGACTACGAGCTGAAATGGGGTTGCGCAAGACGATCCCGC
ACTCATTGATTTCCTGCGCAGATCCACATGGACAGTACTGGGCAAGCGTC
GCCAAGGTCGCGGCAGCGCCTCAGTGGGCGTGGTCCGCGCACTCGCGCGC
TTGCGCCGAAGGCTAATCGTAGTGCAACAGCAGCGGCATGACCGATCACT
GGCCACTACGTGGCGACTATTATGGGGCGCGGCTCAATAGAAGACGCGGC
GGGGAATCTGGTTCTCCTATA
FMO06513.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| S-RA | 2267 | CG4385-RA | 227..1405 | 8..1164 | 5130 | 97 | Plus |
| S-RB | 5206 | CG4385-RB | 1048..2226 | 8..1164 | 5130 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1061234..1062147 | 921..8 | 4445 | 99.6 | Minus |
| 2L | 23513712 | 2L | 1052889..1053047 | 1083..929 | 390 | 94.4 | Minus |
Blast to na_te.dros performed 2014-11-28 19:07:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2510 | 584..744 | 151 | 58.8 | Plus |
FMO06513.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:29 Download gff for
FMO06513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-RB | 1041..2126 | 1..1083 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:38:07 Download gff for
FMO06513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-RA | 220..1305 | 1..1083 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:24 Download gff for
FMO06513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| S-RB | 1041..2126 | 1..1083 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:24 Download gff for
FMO06513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1052883..1053053 | 922..1088 | 93 | <- | Minus |
| 2L | 1061234..1062150 | 1..921 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:29 Download gff for
FMO06513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1052883..1053053 | 922..1088 | 93 | <- | Minus |
| arm_2L | 1061234..1062150 | 1..921 | 99 | | Minus |
