FMO06514.5prime Sequence
1182 bp (1046 high quality bases) assembled on 2008-09-24
> FMO06514.5prime
CAGTCGACATGACTTCTATTATACCGCCGGGCTCGTTAGTTCCGCAGGCG
CAGGGCGTAGAAGCAGCCGTACCCGTATGGTTCAAGATGGACTGGAGCCC
GGAGATAGAGCAGGGCATCTACAAGGACTGGGGAACCTATTACAGTCGCC
GGCGCAGGGAGAATCTGGGCATGTACTACTTCGACAAAGCCCTTAAGCTT
GGACCTGCAGATTTCACGACTCTGTATCGCCGAAGCCAGAGCAAAAGGAA
GAATGCCCAGGCAGATGGGGCACTTAAGGACAGTTTGGAGGCAAAACGAC
TATTGAAAAACTTGCAACGCTATGATGCGCCTATTAATTTGGAGGTCTGC
GATGCATTGTACGAACTAAATCAGCTTGAGAACGCCAAAGCCGAGCTCCA
CGACAATACCCGCCTCTTTACTGGAAACAAAACTAAAATGTTCGAGCAGC
GACTGGTGGTGGTGGACGAGAACATTGAAGATGCCTGTGGCCCTTCGATG
ACTCAGTACATATCGGACAAGGAGAAACTCATAGTGCACTTGAAGGAGGT
ACAGAACAAGTACAAGCCCGATACCAGGCCGCTTTGGAAAATTCTGAAGG
AACAGGAGAAATGCGATGTCCTGAGCATTCCCGAAATCGAAGAAGAAATG
CTTTCCCCCCTTGAAATTGCGAGGCGAAGTCGTGCTTTCGACGTGTTTAA
CCAGATGTTCATAGATAGGTCTTGGCATGATGTCATATTTCTCAAGCACG
TTCGAAAAAATCCAAACCTTCTCTTGAATCAGTGTAAGAACTCCACTGAG
TACTTACAAACGCTTTCTACAAAGAAATATGACGAGATCAAAAGCTTTCT
GGAAAATTCTGGAAGCCCGTAGCCCCATGTACAATATCCGATTACAAAAG
TTTCACAAACAGAAGGTTGATGGATAGGTTCGGCAGGGATTTCTTTTCGA
GTTCAGTACCAAACAGACGAAACATGATTTCCGCACTGGCGTAGTATTCG
GTACTTCGAAAACCAAGAAGTCTAACAAACTCCACCAGTTACGTGAGGAG
TATGGGAGATACGTGGGGAAAAAACCAACAGGATTATGGCTGAAATCGAT
CATCAACGGAGGGGTTACAATTTGGGCGCTGGCTACGTAAATAGTACCGC
TTCGAGAACTTCGCTTTTCCGAGAAAGAACGA
FMO06514.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7634-RA | 1892 | CG7634-RA | 95..1283 | 9..1181 | 4965 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21565520..21565809 | 9..298 | 1450 | 100 | Plus |
| 3L | 28110227 | 3L | 21566087..21566268 | 461..642 | 910 | 100 | Plus |
| 3L | 28110227 | 3L | 21565867..21566032 | 298..463 | 830 | 100 | Plus |
| 3L | 28110227 | 3L | 21566326..21566441 | 642..757 | 580 | 100 | Plus |
| 3L | 28110227 | 3L | 21566506..21566600 | 758..852 | 475 | 100 | Plus |
| 3L | 28110227 | 3L | 21566661..21566838 | 852..1027 | 405 | 89.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:05:55 has no hits.
FMO06514.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:50 Download gff for
FMO06514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7634-RA | 95..1194 | 9..1099 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:38:09 Download gff for
FMO06514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7634-RA | 95..1194 | 9..1099 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:24 Download gff for
FMO06514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7634-RA | 95..1194 | 9..1099 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:24 Download gff for
FMO06514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21565520..21565808 | 9..297 | 100 | -> | Plus |
| 3L | 21565867..21566030 | 298..461 | 100 | -> | Plus |
| 3L | 21566088..21566267 | 462..641 | 100 | -> | Plus |
| 3L | 21566326..21566441 | 642..757 | 100 | -> | Plus |
| 3L | 21566506..21566599 | 758..852 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:50 Download gff for
FMO06514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21558620..21558908 | 9..297 | 100 | -> | Plus |
| arm_3L | 21558967..21559130 | 298..461 | 100 | -> | Plus |
| arm_3L | 21559188..21559367 | 462..641 | 100 | -> | Plus |
| arm_3L | 21559426..21559541 | 642..757 | 100 | -> | Plus |
| arm_3L | 21559606..21559699 | 758..852 | 98 | -> | Plus |
