FMO06518.5prime Sequence
1220 bp (983 high quality bases) assembled on 2008-09-24
> FMO06518.5prime
CAGTCGACAATGTCCATCTATTTGTTATGTTTGACAACAAACGGCGGATT
GCCAGTGTTTACACGAAAGAAGGGAGAATGCGAAAATCTGCCCTTCTCGA
CGGTGGCCTCCTTAAACGGCTTTCACATGTTCTTTAAGTCGCTGGGAATC
CAACTGGAGGCCACGACGACCAGCAAACAGCAGCCTATCCAGAATCAGGC
TCCCGCGGATGCCGAGGAGTGGACTTACATATGGCGCGACCGGGAATCCA
TCACCCTGATCGTGTGCGGCTGCGGTGTTGGGTCGGAGCAACTGCTTCAG
ACGCTGGCTGATCTTGTCTTTGGAGCGATAGGCATGTTCATTACCCGGGC
CGCAGAAATGGCACATGCAACGCTCCTCGATAGACTGAAGAAGGACGCCA
AGAAGTATGTCCCGATTGTTGACGCTATTCTGGAAGCCGCCTGTGCGGGT
ACACAACTCCTGGGCTACACGGACTGTCTGCTGGCGGCGGAAAACGCCCA
GCTGCTGCAGTGTCTAAATGAATTTAGTGGCCACTGTGGCTCGCTCTTTT
GCTGCCTGGTTGTGGGACACCGTATCGCTGTGGCCACTGAGGGCTGGTGG
GATCTGGACACTCGGGACCGCGAGCTGCTGCTGTTTCTGTTGAATTCGTC
GAGCACAATGCAACACGATGTGCCGGTCTATTTGCCCGTGAAAAGTCCCC
ATATAGCCTACCGCTTTGTCAGTATTCCTGTGGCGTCGAACAGTGCTCTG
TGTGTCCTGTGTGGCGCTGAGAATGCCTCGTTCCGAGAGTTGCATGCACA
TGCCATGAGTGCCTACCGGAATGAAGCAACCTTTTGGCAGCCGCCGAGCG
ATGCGTGCCGCGCAGTCTGCCCGAGCATTGGAGATCGATGGAAATTTGCT
GGGCATCATTCTAATTAACCGACACACGCGAAAAAGTCTTCTTTACAGAA
TCTAAACCAGTCGCGAAGTGTCAGCGCATCATTGTGGGGCGATCTACAGC
GCTTGACAATCTAAGAGTTTTTCGATCAACTATTGATGCAGTCCACCATT
GGAACCAGTCGTCAGCAATAAACTACGTAATGATCAAATTAGCTGCCCGA
CTACCACAAGTGCATGCCATTGATGACTGACAAGTTCCAATTCTGTGTGG
CACGGGCCCTGAGCCATGGAAATCCTGGCCAGGACACTACTGGCTTAATA
TATCCCTCCGAGAAGAAGTG
FMO06518.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| fy-RB | 1547 | CG13396-RB | 59..1183 | 10..1118 | 4950 | 97.2 | Plus |
| fy-RA | 1688 | CG13396-RA | 200..1324 | 10..1118 | 4950 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8401978..8402945 | 1048..88 | 4250 | 97.8 | Minus |
| 2L | 23513712 | 2L | 8403004..8403081 | 87..10 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:58:20 has no hits.
FMO06518.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:31 Download gff for
FMO06518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fy-RA | 200..1339 | 10..1129 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:36:58 Download gff for
FMO06518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fy-RA | 362..1501 | 10..1129 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:28 Download gff for
FMO06518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| fy-RA | 200..1339 | 10..1129 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:28 Download gff for
FMO06518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8401884..8402945 | 88..1129 | 96 | <- | Minus |
| 2L | 8403004..8403081 | 10..87 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:31 Download gff for
FMO06518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8401884..8402945 | 88..1129 | 96 | <- | Minus |
| arm_2L | 8403004..8403081 | 10..87 | 100 | | Minus |
