FMO06519.5prime Sequence
1073 bp (910 high quality bases) assembled on 2008-09-24
> FMO06519.5prime
CAGTCGACATGGCAGATGCGTGGGACATAAAATCACTCAAGACAAAGCGG
AACACGCTCCGCGAGAAGCTGGAAAAGCGCAAGAAGGAGCGCATTGAGAT
TCTCTCGGACATTCAGGAGGATCTGACGAATCCCAAAAAGGAACTCGTTG
AGGCTGACTTGGAAGTACAGAAGGAGGTGCTGCAGGCCCTCAGTTCCTGC
TCCCTGGCCCTGCCCATTGTCTCCACACAGGTGGTGGAAAAGATTGCCGG
CAGCAGCCTGGAGATGGTGAACTTTATTCTAGGCAAACTGGCCAACCAGG
GTGCAATTGTGATCCGGAACGTGACCATCGGCACCGAGGCCGGCTGCGAA
ATCATCTCTGTGCAGCCCAAGTAGCTGAAGGAGATCCTGGAAGACACCAA
CGATACGTGTCAGCAAAAGGAGGAGGAGGCCAAGAGAAAGTTGGAAGTCG
ACGATGTTGATCAGCCACAGGAGAAGACAATAAAACTGGAGTCCACTGTA
GCGCGGAAAGAGTCCACAAGCCTGGATGCTCCGGACGACATTATGATGCT
GCTATCCATGCCTTCCACCCGCGAAAAACAGAGTAAGCAGGTGGGCGAGG
AGATTCTTGAGCTGCTTACTAAGCCTACGGCCAAAGAGCGATCCGTGGCT
GAGAAGTTTAAGTCCCCACGGCGGAGCGCAGGTCATGGAGTTTTGCTCCC
CACGGGCACAAAAGTCGAGTGCCTGAAGGCTCAACAAGCCACCGCCGAGA
TGGCGGGCCAAAAAGAAACAAGAAAGAAGAGACGAAAAGGAGCTTCGCCC
GGATGTTGATGCGGGCGAAAACGTCACCGGTAGGTACCCAGACAGAATCG
CAGCCGAGGATGGAGAAATCATGCGGAGGTTATAACATTGCGAAGCCGAG
TCGCAGAATCCACCGATGGCAGCGATACCTGCAGAGTGAGATACGGACAG
GTGCACCTAACTGCATTCAAAAGATCATCAGGCTCACCGGACGAATCCCT
GGGACTGCGTTCCTAACCCTGCTTCCCACTGACCACTTGCAGTCGCGTGC
ACTATGAGAGGTAACCCCTGTCG
FMO06519.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:13:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ime4-RA | 1971 | CG5933-RA | 41..1105 | 9..1058 | 4540 | 96.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:13:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24032760..24033330 | 442..1003 | 1980 | 95.3 | Plus |
| 3R | 32079331 | 3R | 24032397..24032691 | 147..441 | 1460 | 99.7 | Plus |
| 3R | 32079331 | 3R | 24032197..24032340 | 9..152 | 705 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:13:39 has no hits.
FMO06519.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:42 Download gff for
FMO06519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ime4-RA | 41..1115 | 9..1067 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:22:42 Download gff for
FMO06519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5933-RA | 3..1080 | 7..1067 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:36 Download gff for
FMO06519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ime4-RA | 41..1115 | 9..1067 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:36 Download gff for
FMO06519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24032197..24032335 | 9..147 | 100 | -> | Plus |
| 3R | 24032398..24032691 | 148..441 | 99 | -> | Plus |
| 3R | 24032760..24033364 | 442..1031 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:42 Download gff for
FMO06519.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19857919..19858057 | 9..147 | 100 | -> | Plus |
| arm_3R | 19858120..19858413 | 148..441 | 99 | -> | Plus |
| arm_3R | 19858482..19859086 | 442..1031 | 94 | -> | Plus |
