FMO06520.5prime Sequence
827 bp (827 high quality bases) assembled on 2008-09-24
> FMO06520.5prime
CAGTCGACATGGTTTTCTTCAAGTTCTTGAAGAGCAAACTCTCCCAATTT
ATGACGAAAACAAATCGCTTGGTGATTTTGAGGCATGGCGAAAGTGATTT
CAACATTGAGAACAAATTCTGCGGTTGGCATGATGCGCCATTGAGTGAAT
TCGGCGTCCAAGAGGCGCTGACTGTGGCGATTCCCGCGCTCGTCCAATCC
GAGTTGGAATTCGACGTGGTCTATTCATCCGTATTGAGCAGATCTCGTCA
AACGGCCGAATTGATACTCTCCAAGTTGAACTGCGCCTATGTGCCCATTA
AGGAGGATTGGCGGCTGTGCGAAAGGCACTACGGAAATCTGACTGGTTGC
CGGAAACGAGTGGTAGCCGATCGCTATGGGGAGGAGCAGGTTCAGGCCTG
GCGACGTGGATACGACTGCGTACCGCCGCCCATCGATGAGAAGAACCGCT
ACTTCTACACCATTTGCAGCAATCCCATATTCGATGATGTTCCTCGCGGT
GAGTTCCCCCTCGCGGAATCCCTTCACATGTGCGTCGATCGAGTGAAACC
CGTGTGGAAGGAGGTCAGGCGGGAAGTGTTCCAAGGCACCCGGGTACTAA
TGTGCGTCCACGGAACTGTGGCCCGTGCTCTCGTCCAGCACATTGAGGGA
ATCTCCAACGAGGCCATCGAAAAGGTTAACATTCCAAATTGCGTGCCACG
CGTCTATGAGTTCGATTTGAAAACGGGAGGCTTGGTTGGAGCTGCCATCA
ATCTGGGGGATCAGGAGTATATTAGGCGGAAGACAGCCCAGGTGGCAGCC
ATTTGGTGACGCAAGCTTCTAGACCAT
FMO06520.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7059-RA | 1332 | CG7059-RA | 262..1063 | 8..810 | 3960 | 99.6 | Plus |
| CG7059-RD | 1261 | CG7059-RD | 224..992 | 41..810 | 3795 | 99.6 | Plus |
| CG7059-RC | 1238 | CG7059-RC | 201..969 | 41..810 | 3795 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22391368..22391864 | 153..649 | 2455 | 99.6 | Plus |
| 3R | 32079331 | 3R | 22391919..22392074 | 648..803 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 22391194..22391307 | 41..154 | 570 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:31:15 has no hits.
FMO06520.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:12 Download gff for
FMO06520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7059-RA | 257..1063 | 1..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:01 Download gff for
FMO06520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7059-RA | 257..1063 | 1..810 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:14 Download gff for
FMO06520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7059-RA | 257..1063 | 1..810 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:14 Download gff for
FMO06520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22391194..22391306 | 41..153 | 100 | -> | Plus |
| 3R | 22391369..22391863 | 154..648 | 99 | -> | Plus |
| 3R | 22391920..22392080 | 649..810 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:12 Download gff for
FMO06520.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18216916..18217028 | 41..153 | 100 | -> | Plus |
| arm_3R | 18217091..18217585 | 154..648 | 99 | -> | Plus |
| arm_3R | 18217642..18217802 | 649..810 | 99 | | Plus |
