FMO06521.5prime Sequence
1242 bp (886 high quality bases) assembled on 2008-09-24
> FMO06521.5prime
CAGTCGACATGAGATCTTTTCTTTATATGCTCTCCCAACGTCCCAAATTG
GCATGTTTGTGCGGAAAATCTATTATCATATGGCCTGGTAAACGTACAAA
TCTGCCGGAAAATGCTTTCACTCAGCGGATGCTTCAAGAATGTGGCCAAA
TGGCAAAGCCGGACGCTTCGGTGGATCTCGATAATTTCAAAGCTATTTCG
GAGCAGTCTCCCGCCGAGTTTGGCATCGATTCCTGCCGAGTGAAGGCACA
GCCGGAAGATCGAAGTGACCGCATACGGGAACAAATCGCATCCGCCTATC
CGGTGATTCACGAACGGACCCTCCTACTCTTTATCAGCTTCTTAGAGCAC
AAGCTCACGTTCGGCAGCGAGCAGGAGAAGGCCATCTACAAGGACATGAC
TGTGGTTGACCTTGTGCAGCGCCTGCTGGCGAAGAGATGTGTGTGGTTCT
TTGGCGCTAACGACTATTACCGTACAATGCAGGGAAATATTGGTAACGAG
GGCTTCGAGGCAGTGGGTACGCCCGCCGAAAAGGAACCCCTCACTTTGAC
CTCGGTGCTCAGCTACGACGAGATCAAGCTGTCCGCCCTGCTCTACGTGT
CCTGCCACTCGGAGTTCATTAACAATGGCAGTAGGGTCAATGGGGGTGAG
GTGCTGCAGAATAAGGACACTATCGAACGGGAGGGCGTTGTGATTGGACT
AATTGGAGCTCGTTTCGAGCGTCCCGATGTGATGGAGTACCAGGATATCA
TGATTACTAAACCCAAATACTGAGGCCAATGGCTACGGTTTCGATTTGAA
CAGATATCAGCGAGACGGTCACACCTGCATCAATTTGCGCAGAATCTGGC
GCGAGGTCTACGAGGAGCCCAGGACTTCATTTACGCCGACACTCCGGAAT
GATGCTACCCGTTTCGAAGAGGTTTCTCAGGGCATCTTCCATCACCAGGT
AATGGCGCAGCGAAAATGCCACAGTTTCCACACCCTGCTTCTTGGAGGCA
CAGAAAAAGCATTTAAGGGTGGTAAGCCCGCCTTATATTCATGGTGGTCC
GCATCGGGACTGGGCGTTGGAAAGGAGCTTGACAGCCAGGAGCCGACCCT
TCTTGACTCCTTTGAGGGACGATTGGCGGCACTGGGACAACGACATACCC
AATCGGAGTGTACCCTTCCCTAGGTTTCTTGGCCAGTGGGGGGGACAGCT
GGCAGTGACGGGAACCACTCTTCTCTCGGGGGGAACAAACAT
FMO06521.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3568-RA | 1693 | CG3568-RA | 74..1247 | 9..1178 | 4930 | 95.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4543175..4543958 | 363..1144 | 2760 | 93.8 | Plus |
| X | 23542271 | X | 4542703..4542912 | 9..218 | 1050 | 100 | Plus |
| X | 23542271 | X | 4542976..4543123 | 217..364 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:14:05 has no hits.
FMO06521.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:50 Download gff for
FMO06521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3568-RA | 67..1213 | 1..1147 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:02 Download gff for
FMO06521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3568-RA | 60..1206 | 1..1147 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:08:49 Download gff for
FMO06521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3568-RA | 67..1213 | 1..1147 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:08:49 Download gff for
FMO06521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4542696..4542912 | 1..218 | 98 | -> | Plus |
| X | 4542978..4543122 | 219..363 | 100 | -> | Plus |
| X | 4543176..4543960 | 364..1147 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:50 Download gff for
FMO06521.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4436729..4436945 | 1..218 | 98 | -> | Plus |
| arm_X | 4437011..4437155 | 219..363 | 100 | -> | Plus |
| arm_X | 4437209..4437993 | 364..1147 | 94 | | Plus |
