FMO06525.5prime Sequence
540 bp (480 high quality bases) assembled on 2008-09-24
> FMO06525.5prime
GCCAGAGAGGCATGGCCTATATACCACGTCGGGACAAGAACCGAGAGAAG
GATGTTTTGGCCCCCAAGCCTGTGCATCCGCGCTCCTTGAGATTTCATGG
ATTCTTTGGCATGTCGTACGTGCATCAGCATGTGATGGTTGATGAGCGAT
GGACCCCCAATTCCCTAACCGAGCAGTTCAAGGGAATGACCGACTTGTTG
ACGCGTCGTTTGGTGTTCAAGAACCATGAGTCGAAGGCGAATCCCCAGCG
GTATTTTCGAGAGAACAAGCGCCTGAAGTTGCAATGCCGCGATGGTCGCG
CAAAATTACAGAATATTCTGATCAATGACAATACCCATAAGATCCGCAAC
TTTCTCATCAACCATAAGCCGCTGCAGAGACTGTACCAGAAGATGCCAAT
TCACTTGGTCGTGGACAACATCAATCAGCGAACTTTTGTGATGAGAAAGG
AGCGGGATCGTTTGGAGTTTCGCTTGGATCAGTTGAAGCAGCATTACAAG
GAACAGCTGCTGCGTAGAGCACTTTTTGCAGAAATCGCAT
FMO06525.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14609-RB | 2081 | CG14609-RB | 144..681 | 1..540 | 2635 | 99.4 | Plus |
| CG14609-RA | 1993 | CG14609-RA | 144..681 | 1..540 | 2635 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7201375..7201682 | 202..509 | 1525 | 99.7 | Plus |
| 3R | 32079331 | 3R | 7201113..7201313 | 1..201 | 1005 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:58:45 has no hits.
FMO06525.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:46 Download gff for
FMO06525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14609-RA | 144..681 | 1..540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:08 Download gff for
FMO06525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14609-RA | 144..681 | 1..540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:38 Download gff for
FMO06525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14609-RA | 144..681 | 1..540 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:38 Download gff for
FMO06525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7201375..7201682 | 202..509 | 99 | -> | Plus |
| 3R | 7201759..7201787 | 510..540 | 93 | | Plus |
| 3R | 7201113..7201313 | 1..201 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:46 Download gff for
FMO06525.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3026835..3027035 | 1..201 | 100 | -> | Plus |
| arm_3R | 3027097..3027404 | 202..509 | 99 | -> | Plus |
| arm_3R | 3027481..3027509 | 510..540 | 93 | | Plus |
