FMO06526.5prime Sequence
1107 bp (947 high quality bases) assembled on 2008-09-24
> FMO06526.5prime
CAGTCGACATGTCGACGATAAAGTTTCTGCGATCCTCCACACACAACGCA
CTTCGGTCCAGCCTCGGATGGTGCCGCCTTGCTGCCTCAAGACCACGCTA
TGATTACGACCTTGTGGTGCTCGGCGGGGGCTCGGCGGGATTGGCGTGTG
CCAAGGAGGCTGCTGGCTGTGGAGCCCGCGTGCTCTGCTTCGACTACGTC
AAGCCCACTCCAGTGGGCACCAAGTGGGGCATCGGCGGCACCTGCGTGAA
TGTGGGCTGCATCCCCAAGAAGCTAATGCACCAGGCCTCGCTGCTGGGCG
AGGCTGTTCACGAGGCGGTGGCCTACGGCTGGAATGTAGACGACACGAAC
ATACGGCCCGATTGGCGCAAGTTGGTGCGCTCCGTCCAGAACCACATCAA
GTCCGTCAACTGGGTGACCCGCGTGGACCTGCGCGACAAAAAGGTGGAGT
ACGTAAATTCGATGGCCACCTTTCGCGACAGCCACACCATCGAGTATGTG
GCGATGCCAGGTGCCGAGCACCGTCAAGTGACCTCAGAGTACGTGGTGGT
AGCCGTCGGCGGGAGGCCACGCTACCCGGACATTCCCGGAGCCGTTGAAC
TGGGCATCACCAGCGACGATATATTCAGCTACGAGCGAGAGCCGGGTCGT
ACCCTTGTGGTGGGCGCCGGATACGTGGGTCTCGAGTGCGCCTGTTTTCC
TTAAGGGTCTCGGCTACGAGCCCACTGTCATGGTGCGCTCCATTGTGCTG
CGCGGCTTCGATCGCCAGATGTCCGAGCTGCTGGCCGCCTGATGACTGAG
CGCGGCATTCCCTTCCTGGGCCACCACAATCCCCAAGGCCGTGGAGAGGC
AAGCGGACGGACGGCTGCTAGTTCGGTACCGCAACACAACCACCCAATGG
ACGGCAGCGACGTTTTCGACACCGTGCTTGTGGCCATTGGGCGCAAAGTC
CTCATCGAGGACCTCAACCTGACGCCGCCGGATGAAGACTCATGACGACA
GATTGTGGTAGACGCCGCGAGCCACCAGCGTGTCTCATATATTGTCAGTT
GGACATTATATATGGTCGACCAAAACTAACGCCCGGTGTCATCCTGTCCG
ACGCCTG
FMO06526.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Trxr-2-RA | 1794 | CG11401-RA | 96..1192 | 9..1098 | 4990 | 97.7 | Plus |
| Trxr-1-RC | 2108 | CG2151-RC | 314..668 | 98..452 | 775 | 81.8 | Plus |
| Trxr-1-RB | 2277 | CG2151-RB | 483..837 | 98..452 | 775 | 81.8 | Plus |
| Trxr-1-RC | 2108 | CG2151-RC | 762..1027 | 552..817 | 490 | 79.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22550321..22551417 | 9..1098 | 4760 | 97.5 | Plus |
| X | 23542271 | X | 8246098..8246439 | 98..439 | 680 | 81.2 | Plus |
| X | 23542271 | X | 8246831..8246952 | 697..817 | 335 | 86.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:38:45 has no hits.
FMO06526.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:35 Download gff for
FMO06526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trxr-2-RA | 87..1192 | 1..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:09 Download gff for
FMO06526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trxr-2-RA | 87..1192 | 1..1098 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:09 Download gff for
FMO06526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Trxr-2-RA | 87..1192 | 1..1098 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:09 Download gff for
FMO06526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22550312..22551417 | 1..1098 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:35 Download gff for
FMO06526.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22543412..22544517 | 1..1098 | 97 | | Plus |
