FMO06527.5prime Sequence
578 bp (578 high quality bases) assembled on 2008-09-24
> FMO06527.5prime
CAGTCGACATGACTAGGAGCAGCATCGAACTGGGCGACGTGACGCCCCAC
AACATCAAGCAGCTAAAGAAGCTCAACACCGTGGTTTTCCCGGTCTCCTA
CAATGACAAGTTTTACGTGGACGTCCTGGAGGCCGGCGAACTGGCCAAAT
TGGCCTACTACAACGACATTGTAGTGGGCGCCGTCTGCTGTCGCATCGAC
AACACTGAGAACCAGCGGCGCCTGTATATCATGACCCTAGGATGCCTCTC
CCCGTACCGGCGCCTGGGCATCGGCACAGTTATGTTCGAGCACATTATGA
ACTTCGCCGAGAAGGACGGAAACTTCGACAGCATTTTTCTACATGTGCAA
ATCAACAACAACGGAGCCATCGAGTTCTATAAGAAGTTTGGTTTCGAGAT
TGTTGACACCAAGGAGCAATACTATAAGCGCATCGAGCCGGCGGACGCTC
ATGTACTGCAAAAGACTCTGCGCCGCACTGCACCCAACTCAAACAGCACC
GCCACCAGCACCACCGCGAACTCAAATTCACGTAGTAAAGCACGACAGTT
CACATTTGTTGCAAGCTTTCTAGACCAT
FMO06527.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| san-RA | 808 | CG12352-RA | 118..671 | 7..560 | 2755 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11360957..11361282 | 15..340 | 1615 | 99.7 | Plus |
| 2R | 25286936 | 2R | 11361515..11361734 | 341..560 | 1100 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:05:26 has no hits.
FMO06527.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:42 Download gff for
FMO06527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| san-RA | 112..676 | 1..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:11 Download gff for
FMO06527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| san-RA | 120..684 | 1..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:08 Download gff for
FMO06527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| san-RA | 112..676 | 1..565 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:08 Download gff for
FMO06527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11360950..11361282 | 5..340 | 98 | -> | Plus |
| 2R | 11361515..11361739 | 341..565 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:42 Download gff for
FMO06527.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7248455..7248787 | 5..340 | 98 | -> | Plus |
| arm_2R | 7249020..7249244 | 341..565 | 99 | | Plus |
