FMO06528.5prime Sequence
1223 bp (1075 high quality bases) assembled on 2008-09-24
> FMO06528.5prime
CCTATACGAAGTTATCAGTCGACATGGGACAGACACTGTCGGAACCAGTG
ACCACCAAGGACACCGCTTGCTGTGCCAATGCAAGCTATCGCGTGGGCTC
ATCATGCATGCAAGGATGGCGCGTGGATATGGAGGACGCCCACACCCACA
TTCTTTCCCTGCCGGATGACCCGCAGGCGGCCTTCTTCGCCGTTTACGAC
GGACACGGTGGAGCTTCAGTGGCCAAGTACGCTGGTAAGCATTTGCACAA
GTTCATTACGAAGCGGCCGGAGTATCGGGACAATAGCATTGAGGTGGCCT
TGAAAAAGGCCTTCCTCGACTTCGATCGGGAGATGCTGCAAAATGGCTCC
CTTGATGAGCAAACGGCCGGCTGCACTGCCATTGTGGTGCTCATTAGGGA
GCGTCGCCTGTACTGTGCCAATGCGGGCGATTCGCGGGCCATCGCCTGCA
TTTCTGGAATGGTTCACGCCCTGTCCGTCGACCACAAGCCGAATGACGCG
AAGGAGTCCAAACGGATCATGGCCAGCGGTGGTTGGGTGGAGTTTAATCG
GGTCAATGGCAATCTGGCCCTTTCCCGCGCCCTCGGCGACTTTATCTACA
AGAAGAACTTACTAAAGACTCCAGAAGAGCAAATCGTGACGGCCTATCCC
GACGTGGAGGTTCTTGACATCACCGAAGACTTGGAGTTTGTCCTGCTGGC
CTGCGACGGGATCTGGGATGTGATGAGCAACTTCGAAGTCTGCCAGTTCG
TGCACAAGCGCATACGCGATGGCATGGAGCCGGAACTCATTTGCGAGGAA
CTGATGAACAGCTGCTTGTCTCCGGATGGCCACACGGGCAATGTGGGCGG
CGACAACATGACCGTCATCCTGGTGTGCCTGCTGCACAACAAGAGCTACG
AGGATCTGGCGGTGCGCTGCGGAGGCAAACGAAAGACCCCCGTTGAAACC
GTAGCGACATCCAGGATCAGTCGTGAGGTCGTAACTCCTGTTCTCAGGAT
CTTCGGGTCGTCGACTCTCGATGGGCCTGGGCTTCGGACTCGCGAAGCGA
ACTCCCGAGGCTATCTGCAGCTTTCTAGACATTCGTTTGGGCGCGGCCAG
GTATGGTCTAATCTTAATCAAATCTATCTAATCCAACTAGGCTAGGGATC
TGGCATGGACAGGCCTGATTCCCATAAACCCGGGCACGGAGCGCTTGACA
ACTCGAGTGAGATTCTGAGAGGC
FMO06528.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ppm1-RA | 1422 | CG12169-RA | 175..1225 | 24..1063 | 4980 | 99 | Plus |
| CG17746-RB | 1694 | CG17746-RB | 222..1079 | 24..887 | 550 | 72.3 | Plus |
| CG17746-RA | 1577 | CG17746-RA | 247..1104 | 24..887 | 550 | 72.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 581563..582587 | 24..1040 | 4730 | 99 | Plus |
| 3L | 28110227 | 3L | 3238643..3238893 | 274..24 | 400 | 77.3 | Minus |
| 3L | 28110227 | 3L | 3237790..3237911 | 591..470 | 265 | 81.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:14:33 has no hits.
FMO06528.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:58:58 Download gff for
FMO06528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppm1-RA | 166..1237 | 16..1074 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:12 Download gff for
FMO06528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppm1-RA | 166..1237 | 16..1074 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:06 Download gff for
FMO06528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ppm1-RA | 166..1237 | 16..1074 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:06 Download gff for
FMO06528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 581558..582625 | 19..1074 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:58:58 Download gff for
FMO06528.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 581558..582625 | 19..1074 | 98 | | Plus |
