FMO06529.5prime Sequence
1252 bp (1016 high quality bases) assembled on 2008-09-24
> FMO06529.5prime
CAGTCGGACATGCAATACAAAGGGCTCGATACCATCTCGACCGCGATGAT
TTGTTTGGGTTGGCAACGCCCCGACGTTTGTGGCGCAGCCAACTTCACGC
GAGACGCAGCGAAAACAAAAAATACTAAGCTGAAGTTAATTGAGAAAACC
CCAAATAAAACGCGAGTGAAAGGGACCATGAACTTAGACCTGCGTTCGTA
CTCACGCCACTGGCTCACGGAGTTTATCGAGCAGTACCAAGAGGAGGAGT
GCCTCTGGCAGCCCAAGCACAACGACTACAGCAATCACACAGCCCGTAAC
AAGTCCTACGATCGCCTGGTGGAGAAGCTAAAAGAAGTGGAGCCCAATCC
GGACAGGGCGATGGTAGTAAGGAAAATTAACTCACTGCGGTCCGCTTTTC
GGCGGGAATTCCGCAAGACGAGTACCAAAGGCGACTACGCAACGCGTTTG
TGGTACTACGACAAGCTGCTTTTCATCGCTGACCACAAGCCCAAGCGCCA
CGAACTCGGCTCCAAGCCCAAGAGAGAACTCCATATCAGCTTCGACGACG
AGGAGTCAATGGAGTTCGAGGACGACTCACATCACACGGGCACTCAGTCT
CAGCACATGGAGTCCATAATACCCACGTCCCCGGACGATGTGGAAGAAGT
CGCGGCGACGGCCAACAATGTGGTCGTCAGCAGTCAGGGCGCCACTCTGA
GCACCATTTCGGTGACGCCCGCGGAATGTGTGACCCTTGTCAAGAGCGAG
GAGCACCAGGCGGCCGAAGCAGCGGCAGCCGCAGCCCAAGCACACCAGCA
AATGGTAGCCCATGCAGCAGCCCAGACCTCCATTGCGGCGGCGGCGGCTC
AGGGACATGCCGTGAAGGTCTTAGAGATCACCTCCCTAGACCTCCAACTC
CCCAGCGCGAGATACAACAAGCGGTCATCATCTGGAGCACCACCAGCAGC
AAGCTCCACCTGCAGCAGAACGAATGGCCAACCATCAGGCGTTCCCACCA
TCCAGATAGCGGCGATCACTATCAGCCATTGTTGGCATGCCCGCACCACT
GCCTATTCACCACACGGCTACGAGCACATCGGACACGGGCAAGACGACGA
GTACGAATGCATTGGCGTGGGATGTGGCGGACAACTGCGCCTCCATACAC
CCTGACGCCAACGATCTGGGCCGAAACTGAATAAGGCACGTCTTATCACG
ACGACGAGCTGGGACAACCTCCTCACGGTTTCTCTGGCCGTCCTGATCCA
CG
FMO06529.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5180-RC | 1517 | CG5180-RC | 109..1255 | 10..1158 | 5165 | 97.5 | Plus |
| CG5180-RB | 1341 | CG5180-RB | 1..1079 | 78..1158 | 4825 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20558648..20559197 | 370..921 | 2660 | 99.6 | Plus |
| 3R | 32079331 | 3R | 20558243..20558592 | 23..372 | 1750 | 100 | Plus |
| 3R | 32079331 | 3R | 20559268..20559461 | 927..1119 | 400 | 88.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:33:24 has no hits.
FMO06529.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 18:39:35 Download gff for
FMO06529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5180-RB | 100..1227 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:42 Download gff for
FMO06529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5180-RC | 100..1227 | 1..1129 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:35 Download gff for
FMO06529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5180-RC | 100..1227 | 1..1129 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:35 Download gff for
FMO06529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20558237..20558591 | 14..371 | 98 | -> | Plus |
| 3R | 20558650..20559196 | 372..920 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:42 Download gff for
FMO06529.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16383959..16384313 | 14..371 | 98 | -> | Plus |
| arm_3R | 16384372..16384918 | 372..920 | 99 | -> | Plus |
