FMO06531.5prime Sequence
554 bp (554 high quality bases) assembled on 2008-09-24
> FMO06531.5prime
CAGTCGACATGAATCCTCTGGACAAAATACACGCTCTAGATGAGATCGAA
AAGGAGATAATCCTGTGCATGCAAAGTGCAGGACAAGCCTTGCAGGAGTT
GGGCAAGGAAAAGTCTTCCCAGAAAAATGCGGAGACCCAGTCGCAGCAGT
TTCTCAAGAGTCTGTCCAGCGTGGAATCGAAGCTGTCCGAGCAGATCAAC
TACTTGACCCAGGTGTCCACGGGTCAGCCACACGAGGGTTCCGGCTATGC
ATCCGCCAAAGTGCTCCAAATGGCTTGGCATCGCATTCAGCACGCTAGGT
CCAGAGTGCGTGAACTTGAGGAAACTAAGGCCAAACACTCACATGCAGCT
CGTCAGCAGTTGAAGCGTCAGCAGGAACATGCCGCCGCCCAGCAACAGCA
GCAGCAACAACAACAGCAGCAGCAGCAACAACAACAGATGCAACAGGCGG
CACAACAGCAGCAACAACAAACCGGAGGAGGAAATGCCGGCAGCGGAGAT
CATCCCATGGGCGGAGACTCCTCAATGTCAACCAACGCAAGCTTTCTAGA
CCAT
FMO06531.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED11-RA | 713 | CG6884-RA | 48..575 | 9..536 | 2640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18746028..18746485 | 79..536 | 2290 | 100 | Plus |
| 3L | 28110227 | 3L | 18745903..18745976 | 9..82 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:57:33 has no hits.
FMO06531.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:07 Download gff for
FMO06531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED11-RA | 43..582 | 1..544 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:15 Download gff for
FMO06531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED11-RA | 1..536 | 9..544 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:42:58 Download gff for
FMO06531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED11-RA | 43..582 | 1..544 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:42:58 Download gff for
FMO06531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18745898..18745975 | 1..81 | 95 | -> | Plus |
| 3L | 18746031..18746492 | 82..544 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:07 Download gff for
FMO06531.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18738998..18739075 | 1..81 | 95 | -> | Plus |
| arm_3L | 18739131..18739592 | 82..544 | 99 | | Plus |
