FMO06534.5prime Sequence
1197 bp (1005 high quality bases) assembled on 2008-09-24
> FMO06534.5prime
CAGTCGGACATGTGGATCGTACTGTGCGCTTTTCTTGCCCTTCCACTGTT
CTTGGTGACCTATTTCGAGCTTGGACTACTGCGGCGAAAGCGAATGCTGA
ACAAATTCCAAGGCCCAAGTATGCTGCCTTTGGTGGGCAATGCTCATCAG
ATGGGAAACACTCCCACAGAGATTTTGAACCGGTTTTTTGGCTGGTGGCA
TGAGTACGGCAAGGATAACTTTCGTTATTGGATAGGTTACTACTCCAATA
TTATGGTCACTAATCCCAAATACATGGAGTTTATACTTAGCAGTCAAACT
CTGATATCCAAGTCCGATGTATATGATCTTACTCACCCATGGCTGGGATT
GGGCCTCCTCACCAGTACTGGCAGCAAATGGCACAAACACCGGAAGATGA
TAACCCCAGCCTTCCACTTCAACATCCTGCAGGACTTTCACGAGGTCATG
AACGAGAACTCCACCAAGTTCATAGATCAGCTGAAGAAGGTGGCAGACGG
AGGCAACATCTTCGATTTCCAGGAAGAGGCACATTATTTGACTCTGGACG
TCATTTGCGATACAGCTATGGGTGTGTCCATCAATGCCATGGAAAACCGA
AGTTCCTCCGTTGTGCAAGCCTTTAAAGATATTACCTACACCATTAAGAT
GAGAGCTTTCAGTCCGTGGAAGCGCAACAAATACCTCTTTCACTTTGCTC
CTGAATATCCAGAATATAGTAAAACACTGAAAACCCTGCAGACTTTACCA
ATGAGATAATAGCGAAAGAATCGAAGTCCGAAAATCAGGGCTTGAAGTCG
GCATTAAGGCTGACGAGTTCTCCCGCAAGAAAATGGCATTTTTGGACACT
CTGCTGTCATCCAAAGTGGATGGACGTCCTCTGACTTCCCAAGAGCTTTA
CGAGGAAGTTTCACCTTTATGTTTGAAGGGCATGACACTACTACATCTGG
TGTAGGTTTGCAGTCTACTTACTTTCTCGACATCCAGATGACAGGAAATT
ATTTACGAGCATGCGATGTGATGGGCGCTTCTGACTGTCGAGAATGCACG
ATCAGGAAATACCCAATGAACATTGATGTTTAAGGGAGGCCCACGTCTTT
ATCGAGTTCCTTTCATGTCGCTTACTGAAAGACTCGTACTGATGTATTGG
GCCAAGGACTACCCTGAACCTTGGACCTCTTAGTGTGGTGCAATACG
FMO06534.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4e1-RA | 1772 | CG2062-RA | 53..1200 | 10..1128 | 4970 | 97 | Plus |
| Cyp4e2-RB | 1880 | CG2060-RB | 272..1143 | 124..991 | 1295 | 77.6 | Plus |
| Cyp4e2-RA | 1783 | CG2060-RA | 175..1046 | 124..991 | 1295 | 77.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8448101..8448452 | 278..629 | 1760 | 100 | Plus |
| 2R | 25286936 | 2R | 8448527..8448892 | 630..991 | 1630 | 98.9 | Plus |
| 2R | 25286936 | 2R | 8445532..8445883 | 278..629 | 950 | 84.7 | Plus |
| 2R | 25286936 | 2R | 8447503..8447662 | 10..169 | 800 | 100 | Plus |
| 2R | 25286936 | 2R | 8447930..8448042 | 167..279 | 565 | 100 | Plus |
| 2L | 23513712 | 2L | 9749185..9749442 | 594..337 | 480 | 79.1 | Minus |
| 2R | 25286936 | 2R | 8446129..8446307 | 815..991 | 285 | 79.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:58:30 has no hits.
FMO06534.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:37 Download gff for
FMO06534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4e1-RA | 45..1105 | 1..1050 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:04 Download gff for
FMO06534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4e1-RA | 27..1087 | 1..1050 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:32 Download gff for
FMO06534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4e1-RA | 45..1105 | 1..1050 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:32 Download gff for
FMO06534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8448103..8448452 | 280..629 | 100 | -> | Plus |
| 2R | 8448527..8448896 | 630..994 | 98 | -> | Plus |
| 2R | 8447495..8447662 | 1..169 | 97 | -> | Plus |
| 2R | 8447933..8448042 | 170..279 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:37 Download gff for
FMO06534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4335000..4335167 | 1..169 | 97 | -> | Plus |
| arm_2R | 4335438..4335547 | 170..279 | 100 | -> | Plus |
| arm_2R | 4335608..4335957 | 280..629 | 100 | -> | Plus |
| arm_2R | 4336032..4336401 | 630..994 | 98 | -> | Plus |
