FMO06535.5prime Sequence
783 bp (783 high quality bases) assembled on 2008-09-24
> FMO06535.5prime
CAGTCGACATGTATTGTACTATTGGATTGCTCAGCCTGCTGGCCTTGGGA
TGCAGTGCAGCTCCCACGGATAAAAACTACTTTGCTGATTTGCCAAAATG
CTCGACTGAAGAGGATCAGCTGGGTGAGTGCGTGAAGCAGCTGTTTAACA
CATTGACTCCGCGCCTCAAGGACGGTAATCCAGAGTTGAGAATCGAGCCC
TACGAACCTTTGCACCTCAACCGAACCAGCTTCCAATACTCTAGTGGCAC
TGTCAATGGTCGCATCACCGTTCGCAATGCCAAGATTTATGGCTTCTCCT
CCAATCGGGCCAAAGAGGTGTCCGTCAAACTCAATGGCGACAAGGTGAAA
CTCCGTCTGGTCACCCAAATGCCCAAGTTGAACATTGTGGGCAGCTATAA
GGCCGACATGCAGGTGAATCAGCTGCAACTGAAGCCCAAGGGTGAATTCA
ACGTAACGCTCTTGGATGTGGAGGCCATAACGGTGACCGATGGTGAGGTC
TACGAGAAGGATGGTCATCGGTTTTTCCGCCTCAAGAATATCGACTCAAA
GCCAAAGATCAAGGACTTGGTTATCAAGGCAAACGGAATATTTGCAGATC
CTGAACTGGATAAAATCGCTCTGAATGTGGCTAATCAGTATTGGCGCGAT
ATTTACGGAATAATGTTGCCTGAGACTCGACAGTTTTGGCAACCCCTTAT
GTTGCGAATGTTCAACGAGGCATTTCAACTAGTTCCCCATCGACCAGTTT
CTCAAGGGAGGCAAGCTTTCTAGAACATTTCGT
FMO06535.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5945-RB | 1079 | CG5945-RB | 209..956 | 9..757 | 3690 | 99.6 | Plus |
| CG5945-RA | 903 | CG5945-RA | 79..826 | 9..757 | 3690 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13240335..13240710 | 87..462 | 1880 | 100 | Plus |
| 2L | 23513712 | 2L | 13240763..13240909 | 463..609 | 735 | 100 | Plus |
| 2L | 23513712 | 2L | 13241503..13241650 | 609..757 | 665 | 98 | Plus |
| 2L | 23513712 | 2L | 13240197..13240275 | 9..87 | 395 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:44:51 has no hits.
FMO06535.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:03 Download gff for
FMO06535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5945-RA | 72..833 | 1..767 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:05 Download gff for
FMO06535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5945-RA | 58..819 | 1..767 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:18 Download gff for
FMO06535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5945-RA | 72..833 | 1..767 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:18 Download gff for
FMO06535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13241504..13241657 | 610..767 | 95 | | Plus |
| 2L | 13240763..13240909 | 463..609 | 100 | -> | Plus |
| 2L | 13240190..13240275 | 1..87 | 96 | -> | Plus |
| 2L | 13240336..13240710 | 88..462 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:03 Download gff for
FMO06535.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13240190..13240275 | 1..87 | 96 | -> | Plus |
| arm_2L | 13240336..13240710 | 88..462 | 100 | -> | Plus |
| arm_2L | 13240763..13240909 | 463..609 | 100 | -> | Plus |
| arm_2L | 13241504..13241657 | 610..767 | 95 | | Plus |
