FMO06536.5prime Sequence
587 bp (587 high quality bases) assembled on 2008-09-24
> FMO06536.5prime
CAGTCGACATGTCCGATTCCACCGTGTGCTTCTCTAAGCACAAGATCGTG
CCGGATATCCTGAAGACGTGTCCTGCCACTTTGCTTACGGTGACTTATGG
TGGTGGACAGGTGGTGGATGTAGGCGGTGAATTGACACCCACGCAAGTGC
AGAGCCAGCCAAAGGTGAAATGGGATGCAGATCCGAATGCCTTTTACACG
CTCCTCCTGACCGATCCGGATGCGCCCAGTCGCAAGGAGCCCAAGTTCCG
CGAGTGGCACCACTGGCTGGTGGTCAATATTCCAGGGAACCAAGTCGAGA
ACGGCGTAGTTTTGACCGAATATGTGGGTGCAGGTCCGCCGCAAGGCACG
GGGCTTCATCGTTACGTCTTCCTGGTCTTCAAACAGCCCCAAAAGCTCAC
TTGCAACGAGCCCAAAATCCCAAAAACGAGCGGCGACAAGCGAGCCAATT
TCAGCACCTCCAAGTTCATGAGCAAGTACAAGCTGGGAGATCCCATTGCC
GGAAACTTTTTTCAGGCACAGTGGGACGACTATGTGCCCAAGTTATACAA
GCAACTATCTGGCAAGAAGGCAAGCTTTCTAGACCAT
FMO06536.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10298-RA | 745 | CG10298-RA | 69..629 | 9..569 | 2805 | 100 | Plus |
| CG6180-RA | 1020 | CG6180-RA | 513..696 | 195..378 | 275 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6343203..6343683 | 89..569 | 2405 | 100 | Plus |
| 3R | 32079331 | 3R | 6343070..6343152 | 9..91 | 415 | 100 | Plus |
| 2L | 23513712 | 2L | 12708173..12708356 | 195..378 | 275 | 76.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:55:04 has no hits.
FMO06536.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:18:37 Download gff for
FMO06536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10298-RA | 60..629 | 1..569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:06 Download gff for
FMO06536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10298-RA | 60..629 | 1..569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:54 Download gff for
FMO06536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10298-RA | 60..629 | 1..569 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:54 Download gff for
FMO06536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6343061..6343150 | 1..89 | 95 | -> | Plus |
| 3R | 6343204..6343683 | 90..569 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:18:37 Download gff for
FMO06536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2168783..2168872 | 1..89 | 95 | -> | Plus |
| arm_3R | 2168926..2169405 | 90..569 | 100 | | Plus |
