FMO06537.5prime Sequence
843 bp (843 high quality bases) assembled on 2008-09-24
> FMO06537.5prime
CAGTCGACATGTCGCTTAAGAAGGAGACGCCCTCGGATGTGCAACTGCAC
ATGGCAGCGATGAGGGGAGATGAGGTGGCTCTTCTTCGCGTTCTGGACAG
TGGCAAAGTGCATGTCGACTGCAAGGATGAGGATGGAACCACCCCACTGA
TTTTGGCTGCTGCCGGAGGTCACACCTACTGCGTGATGGAGCTGCTCGAT
CAGGGAGCCGATCCAAACTCGCGTCGCCTAACGGGCACCACGCCCCTTTT
CTTCGCCGCCCAAGGCGGCCACCTGGACGTGGTGAAGATTCTGATAAAGG
CGGGCGCCAGCGTGGACACGCCCTCCGCGGATGGCGGCACGCCCCTTTTT
GTGGCCTGCCAGGGTGGTCACGTGAAGATCGTTCGCGAGCTCTTGGACTG
CGGAGCGAATGTCAATGCGCACATGAAGGATCGAGCCACGCCGGTTTTTA
TCTCCGCCCAAAATGGCCATCGCACGGTTCTGTCGCTGCTGATTCAGGCT
GGTGCCGAGATCGATATCAAGCGGATAGACGGCGCCACGCCCCTGTGGAT
AGCAGCCCAGATGGGACAGGATCACATATGCAAGGTGCTGCTCCAGAACG
GCGCCAATGTGGACACCGTGCGTTGCGACGGCGCCACGCCCCCTCTTCAA
GGCGGCTCACAAGGGCCATGCCGCCGTAATCACCGTGCTGCTCAAAATAC
CGACCCAATCTCGGCCAGCTGCCCAATGGAGAGTCCGCACTGCATGCCGC
CGCCATGTTTTGGCCACATGACCCGTCTGCCAAGCAGCTGGTGGCCGGCC
GGCAGCGATGTCCCTGCTGAAAAACACGATGGGTCTTGACGGG
FMO06537.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:05:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3104-RC | 2395 | CG3104-RC | 929..1747 | 8..832 | 3915 | 98.9 | Plus |
| CG3104-RB | 1933 | CG3104-RB | 467..1285 | 8..832 | 3915 | 98.9 | Plus |
| CG3104-RA | 2213 | CG3104-RA | 504..1322 | 8..832 | 3915 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:05:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2849899..2850279 | 813..427 | 1635 | 98.4 | Minus |
| 2L | 23513712 | 2L | 2850334..2850633 | 429..130 | 1500 | 100 | Minus |
| 2L | 23513712 | 2L | 2852146..2852259 | 132..19 | 570 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:05:54 has no hits.
FMO06537.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:34 Download gff for
FMO06537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3104-RA | 500..1330 | 1..843 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:19 Download gff for
FMO06537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3104-RB | 461..1291 | 1..843 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:38 Download gff for
FMO06537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3104-RA | 500..1330 | 1..843 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:38 Download gff for
FMO06537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2849871..2850277 | 429..843 | 97 | <- | Minus |
| 2L | 2850335..2850631 | 132..428 | 100 | <- | Minus |
| 2L | 2852147..2852268 | 10..131 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:34 Download gff for
FMO06537.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2849871..2850277 | 429..843 | 97 | <- | Minus |
| arm_2L | 2850335..2850631 | 132..428 | 100 | <- | Minus |
| arm_2L | 2852147..2852268 | 10..131 | 96 | | Minus |
