FMO06538.5prime Sequence
580 bp (580 high quality bases) assembled on 2008-09-24
> FMO06538.5prime
CAGTCGACATGCAGTCTTTTACAATTCTAACCCTTTTCACCATCGTTTTG
ATGGTCCAAAATTCAAGAGCTGGAACTCTCAGCATTGGGTCCCTGATGGG
AGATGTGTCCCAAGTGGCTGTTGCTGGGGAGAAGGTCATCCATCAACTGG
AAAACGCTGTGGCCAGCTCTCAATCGGATTTTGTCCAGCCAACCACTTTG
AACATTCTAAGCGACATGGGAAACGCCTTGGGTGATCTGGCTAACGCCCT
TACTAGTTTAAGAGTGGATAACGATTATATGCAACCCGAGGCCACCAATC
TCTTGGGCAATGTTCTGGGTGGAGTGGGCACTGGTCTTGGAGATTTGGCT
AATGCCATTACCAGTCTTAGTGTTCAGATGACGAACGCACCTCAGGCTCG
CAGTCTTTCGTCCAATGGTGCTTCTATTATAGCCAAAGGAGGAGCCGTGA
GTGCGAAGACTATTGCCGCTGCTGCAGATGCAGCTGCCCCTTATATAAAG
CAGCTAAATGCTGGCCTAGGCGATCTGGCTAATGCCCTCACCAACCTCGC
AAGCTTTCTAGACCATTCGTTTGGCGCGCG
FMO06538.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18404-RA | 607 | CG18404-RA | 9..550 | 7..548 | 2710 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30253190..30253425 | 7..242 | 1180 | 100 | Plus |
| 3R | 32079331 | 3R | 30253485..30253592 | 243..350 | 540 | 100 | Plus |
| 3R | 32079331 | 3R | 30253873..30253959 | 444..530 | 435 | 100 | Plus |
| 3R | 32079331 | 3R | 30253660..30253719 | 351..410 | 300 | 100 | Plus |
| 3R | 32079331 | 3R | 30253774..30253812 | 406..444 | 180 | 97.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:06:05 has no hits.
FMO06538.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:12:42 Download gff for
FMO06538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18404-RA | 4..561 | 1..557 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:20 Download gff for
FMO06538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18404-RA | 4..561 | 1..557 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:35:44 Download gff for
FMO06538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18404-RA | 4..561 | 1..557 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:35:44 Download gff for
FMO06538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30253185..30253425 | 1..242 | 98 | -> | Plus |
| 3R | 30253485..30253592 | 243..350 | 100 | -> | Plus |
| 3R | 30253660..30253719 | 351..410 | 100 | -> | Plus |
| 3R | 30253779..30253811 | 411..443 | 100 | -> | Plus |
| 3R | 30253873..30253959 | 444..530 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:12:42 Download gff for
FMO06538.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26079595..26079681 | 444..530 | 100 | -> | Plus |
| arm_3R | 26078907..26079147 | 1..242 | 98 | -> | Plus |
| arm_3R | 26079207..26079314 | 243..350 | 100 | -> | Plus |
| arm_3R | 26079382..26079441 | 351..410 | 100 | -> | Plus |
| arm_3R | 26079501..26079533 | 411..443 | 100 | -> | Plus |
