FMO06539.5prime Sequence
939 bp (939 high quality bases) assembled on 2008-09-24
> FMO06539.5prime
CAGTCGACATGAGTGCTCAACCGAGTCCGCATATGAATCCTCAGCAGCAG
CAGCAGCAGCAACAGCAGCAGCAGCAGACCGAGCAGGAGAAGGTGTACCA
GTGGATCAATGAGCTGGCCCATCCGGACACGCGTGAAACCGCTCTGCTCG
AGCTAAGCAAGAAGCGTGAGACGGACCTGGCCCCCATGCTGTGGAACAGC
TTCGGGACCGCCTGCGCCCTGTTGCAGGAGATTGTTAACATCTACCCATC
GATAACGCCGCCCACTTTGACGGCCCACCAGTCGAACCGCGTGTGCAACG
CCCTGGCGCTGCTGCAGTGCGTCGCCTCGCACCCGGAGACTCGCACGGCC
TTCCTGCAGGCCCAGATACCGCTGTACTTGTACCCTTTCTTGTCGACCAC
GTCCAAGACCAGGCCCTTCGAGTACTTGCGCCTGACCAGTTTGGGCGTGA
TTGGTGCTCTGGTCAAGACCGACGAACAGGAGGTGATCACCTTTCTGCTG
ACCACCGAGATCGTGCCCCTTTGTCTGAGCATCATGGACAGCGGATCGGA
GCTGAGCAAGACTGTGGCCACTTTCATCATCCAGAAGATCCTGCTCGATG
AGTCGGGTCTGTCGTACATCTGCCAGACCTACGAACGCTTTTCGCACGTG
GCCATCACCCTGGGCAAAATGGTCATCCAGCTGGCGAAGGATCCATGCGC
CCGGCTGTTGAAGCATGTGGTGCGCTGCTATCTGCGTCTTTCGGACAATA
CACGCGCTCGCAAGGCCCTGGGACAGTGTCTGCCCGATCAGCTGCGTGAC
GGCACCTTTGCGCTGTGCCTGCAAGAGGACAAGTCGACCAAGCAGTGGCT
GCAGATGCTGCTCAAGAACCTGGAACTCGGGCGCCACTCCGCAGCAAGAT
CGGCATGTCGCAACTGGGCTCCGCAAGCTTTCTAGACAT
FMO06539.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rcd-1-RA | 1612 | CG14213-RA | 422..1333 | 9..922 | 4505 | 99.7 | Plus |
| Rcd-1-RB | 1544 | CG14213-RB | 354..1265 | 9..922 | 4505 | 99.7 | Plus |
| Rcd-1-RC | 1725 | CG14213-RC | 544..1446 | 9..922 | 4360 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19639444..19639820 | 91..467 | 1885 | 100 | Plus |
| 2L | 23513712 | 2L | 9013086..9013889 | 872..69 | 1875 | 82.2 | Minus |
| X | 23542271 | X | 19639894..19640091 | 466..663 | 990 | 100 | Plus |
| X | 23542271 | X | 19640301..19640467 | 754..922 | 730 | 98.2 | Plus |
| X | 23542271 | X | 19640147..19640239 | 662..754 | 465 | 100 | Plus |
| X | 23542271 | X | 19639310..19639395 | 9..94 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:58:57 has no hits.
FMO06539.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:55 Download gff for
FMO06539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd-1-RB | 350..1265 | 1..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:22 Download gff for
FMO06539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14213-RA | 418..1333 | 1..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:47 Download gff for
FMO06539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rcd-1-RB | 350..1265 | 1..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:47 Download gff for
FMO06539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19639306..19639393 | 1..92 | 95 | -> | Plus |
| X | 19639446..19639820 | 93..467 | 100 | -> | Plus |
| X | 19639896..19640090 | 468..662 | 100 | -> | Plus |
| X | 19640148..19640239 | 663..754 | 100 | -> | Plus |
| X | 19640302..19640467 | 755..922 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:55 Download gff for
FMO06539.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19534335..19534500 | 755..922 | 98 | | Plus |
| arm_X | 19533339..19533426 | 1..92 | 95 | -> | Plus |
| arm_X | 19533479..19533853 | 93..467 | 100 | -> | Plus |
| arm_X | 19533929..19534123 | 468..662 | 100 | -> | Plus |
| arm_X | 19534181..19534272 | 663..754 | 100 | -> | Plus |
