FMO06540.5prime Sequence
823 bp (758 high quality bases) assembled on 2008-09-24
> FMO06540.5prime
CAGTCGACATGTGCACTAAGACAAACGAACGTGCCACTCGACTTCATGAA
CCTGGAAGGGTTTGCAGGGAGTTGTTGTACCTCAGGTCGAAGGTGCCAGT
ACGTGAAGTTCCCGCCTTCACTTTTCAGGCACTGCAGCCTAATACTGTGG
TGAAACCTCCTCCAAAGATCGACATTTTCAAGCGGAAGCCAGTGAAGGAG
ACCGTATTCAAGATCTACTTCAATCGCGGCGACATTCCGTGTGTGATGTC
CGGCAGGAGCAGCAAACAGGATCCGACCAAGGAGCGTCCGGTGAAGTGGC
ACTGTGTGCCGGAAAATCTCGACTATTGCTACTATCTGCCCATCTTCGTG
GACGGACTGGCGGACATGGACTACGACACCCGGTTGCTAGCGGTCAACGG
AGCCATTGACCTCATCATGCGGTCCCCCAAAAAGGTGCTACCCGTGCTGC
CCAAGCTCATTCTTCCTCTGAAACGGGCCTTCCAGACGCGCGACAAGCGG
ATCATCATCTCCGCCCTCCAAGTCATACAACTGATGGTCCGACTGGGTCC
CTGTGTGGGTCAGGCCCTGGTGCCCTTCTATCGCCAGTTGCTGGCCGTGT
GCAATCTTTTACAAGAACATCAACGTGAATCTGGGAGAGGGTATCGATCC
CGATCGAAACTGCCGCATCTGCGACGTCATCGAGGACACCCTGAAGCTGC
TGGAGTACTGCGGAGGCCCCAATGCCTTCATCAACATCAAGTACATGATG
CCCACCTACTATAGCAGCGTCTTCCCCAGTGCGAAGCGCCCGAGCCCCGG
GAAGCTGCAAGCTTCTAGACCAT
FMO06540.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17349-RA | 1147 | CG17349-RA | 200..996 | 9..805 | 3850 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19370926..19371307 | 167..548 | 1895 | 99.7 | Plus |
2L | 23513712 | 2L | 19372301..19372560 | 546..805 | 1130 | 97.3 | Plus |
2L | 23513712 | 2L | 19370644..19370730 | 9..95 | 435 | 100 | Plus |
2L | 23513712 | 2L | 19370795..19370867 | 95..167 | 365 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:38:49 has no hits.
FMO06540.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:37 Download gff for
FMO06540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17349-RA | 200..996 | 9..805 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:23 Download gff for
FMO06540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17349-RA | 167..963 | 9..805 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:11 Download gff for
FMO06540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17349-RA | 200..996 | 9..805 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:11 Download gff for
FMO06540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19372302..19372560 | 547..805 | 97 | | Plus |
2L | 19370926..19371305 | 167..546 | 99 | -> | Plus |
2L | 19370644..19370730 | 9..95 | 100 | -> | Plus |
2L | 19370796..19370866 | 96..166 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:37 Download gff for
FMO06540.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19370644..19370730 | 9..95 | 100 | -> | Plus |
arm_2L | 19370796..19370866 | 96..166 | 100 | -> | Plus |
arm_2L | 19370926..19371305 | 167..546 | 99 | -> | Plus |
arm_2L | 19372302..19372560 | 547..805 | 97 | | Plus |