Clone FMO06540 Report

Search the DGRC for FMO06540

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:65
Well:40
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG17349-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO06540.5prime Sequence

823 bp (758 high quality bases) assembled on 2008-09-24

> FMO06540.5prime
CAGTCGACATGTGCACTAAGACAAACGAACGTGCCACTCGACTTCATGAA
CCTGGAAGGGTTTGCAGGGAGTTGTTGTACCTCAGGTCGAAGGTGCCAGT
ACGTGAAGTTCCCGCCTTCACTTTTCAGGCACTGCAGCCTAATACTGTGG
TGAAACCTCCTCCAAAGATCGACATTTTCAAGCGGAAGCCAGTGAAGGAG
ACCGTATTCAAGATCTACTTCAATCGCGGCGACATTCCGTGTGTGATGTC
CGGCAGGAGCAGCAAACAGGATCCGACCAAGGAGCGTCCGGTGAAGTGGC
ACTGTGTGCCGGAAAATCTCGACTATTGCTACTATCTGCCCATCTTCGTG
GACGGACTGGCGGACATGGACTACGACACCCGGTTGCTAGCGGTCAACGG
AGCCATTGACCTCATCATGCGGTCCCCCAAAAAGGTGCTACCCGTGCTGC
CCAAGCTCATTCTTCCTCTGAAACGGGCCTTCCAGACGCGCGACAAGCGG
ATCATCATCTCCGCCCTCCAAGTCATACAACTGATGGTCCGACTGGGTCC
CTGTGTGGGTCAGGCCCTGGTGCCCTTCTATCGCCAGTTGCTGGCCGTGT
GCAATCTTTTACAAGAACATCAACGTGAATCTGGGAGAGGGTATCGATCC
CGATCGAAACTGCCGCATCTGCGACGTCATCGAGGACACCCTGAAGCTGC
TGGAGTACTGCGGAGGCCCCAATGCCTTCATCAACATCAAGTACATGATG
CCCACCTACTATAGCAGCGTCTTCCCCAGTGCGAAGCGCCCGAGCCCCGG
GAAGCTGCAAGCTTCTAGACCAT

FMO06540.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG17349-RA 1147 CG17349-RA 200..996 9..805 3850 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19370926..19371307 167..548 1895 99.7 Plus
2L 23513712 2L 19372301..19372560 546..805 1130 97.3 Plus
2L 23513712 2L 19370644..19370730 9..95 435 100 Plus
2L 23513712 2L 19370795..19370867 95..167 365 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:38:49 has no hits.

FMO06540.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:37 Download gff for FMO06540.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17349-RA 200..996 9..805 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:23 Download gff for FMO06540.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17349-RA 167..963 9..805 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:24:11 Download gff for FMO06540.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17349-RA 200..996 9..805 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:24:11 Download gff for FMO06540.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 19372302..19372560 547..805 97   Plus
2L 19370926..19371305 167..546 99 -> Plus
2L 19370644..19370730 9..95 100 -> Plus
2L 19370796..19370866 96..166 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:37 Download gff for FMO06540.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19370644..19370730 9..95 100 -> Plus
arm_2L 19370796..19370866 96..166 100 -> Plus
arm_2L 19370926..19371305 167..546 99 -> Plus
arm_2L 19372302..19372560 547..805 97   Plus