FMO06541.5prime Sequence
1208 bp (998 high quality bases) assembled on 2008-09-24
> FMO06541.5prime
CAGTCGACATGCCCTCAATAAGCCGGGAGGAGGAGACCGGAGTACAGTAC
TCCTACACGGAAGTCAGTACGTTCCAGATAAGAGAAGGAAACACTCGAAC
GATGTCACCCGAACCGGTCAAGTCCGGTCGCATTTTTATGGCTGCCGTGG
CAGCCAACTTGTCCGCCTTTGTGGTGGGAACCACCCTAGGCTGGACCTCC
CCCATCGGGCCCAAGCTCAAGTCCGAGGACACCTCAGACTCGCCGCTGAG
CCGGCCCATAACTTCCGATGAAGATGCCTGGATTTCATCATTGATTGCCG
TCGGAGCTCTGGTGGCTCCATTTGTGGCCGGTCCGATGGCTGATCGCATT
GGCAGAAAGTGGGTGCTCCTCTCCAGCAGTCTGTTCTTCGTCCTGGCTTT
CGGCCTAAATATGGTGGCCTCCGAGGTGTGGATTCTGTACATGTCCCGCC
TCATCCAGGGATTTGGCGTCGGCTTCGTGATGACCGTGCAGCCCATGTAT
GTGGGTGAGATTTCCACGGACAATGTGCGCGGAGCCACCGGATCCTTGAT
GCAGCTCTTCATTGTGGGTGGCATTCTGTACGTCTATGCCATTGGACCGT
ATGTTTCATACCAGGCTCTACAGTGGTGTTGCATTGTGGTGCCCGTAGTG
TTCGACTTGGTCTTCTACATGATGCCCGAGAGTCCGTACTTCTTCGCCGG
AAAAGGTCGAAAGTCGGAGGCACTGAAGTCGCTGCAGTTCCTTCGGGGCC
AGAGTGCCGAGGGCGTGCACGACGAGATGGCCGAGATCCAGGCCAATGTA
GAGGAGGCGATGGCCAGCAAGGGCACAGTGATGGATTTGTTCAAGAATGC
CGGCAATCGCAGGCCTTGTTCATCTGCGCTGGCCTGATCTCCTTCCAGCA
GCTGTCCGGCATCAATGTGGTCTCTTCAACAGCCAGTCTATCTCGCAGTG
CCAACACTGGGCTGGATCCGGCGATTGCCACATCATAATCGGATGTGTCA
GTGGATCCTCGCACTGACGCCTCTGTGCGATCGCTGGCAGGAGGATGCTG
CTGACGTCCTCAATGTGAATGTCATTGGGCTGCGCTGGAACATTCTTTCA
TGCAGCTGTCAGGAACTCTCATTGATCTGAGTCCGTTCGTCTGTATCCTC
CACATCGGTACGTACGGAATCGACCCGTGCATGGCCTGTCCGGGAAGAGT
TCCGGCTA
FMO06541.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1213-RD | 1862 | CG1213-RD | 230..1320 | 9..1081 | 4975 | 98.1 | Plus |
| CG1213-RB | 1862 | CG1213-RB | 230..1320 | 9..1081 | 4975 | 98.1 | Plus |
| CG1213-RC | 2092 | CG1213-RC | 460..1550 | 9..1081 | 4975 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5845007..5845424 | 152..569 | 2090 | 100 | Plus |
| 3R | 32079331 | 3R | 5845494..5845931 | 567..999 | 1945 | 98.4 | Plus |
| 3R | 32079331 | 3R | 5844559..5844703 | 9..153 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:57:35 has no hits.
FMO06541.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:09 Download gff for
FMO06541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1213-RC | 453..1554 | 1..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:24 Download gff for
FMO06541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1213-RB | 207..1308 | 1..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:00 Download gff for
FMO06541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1213-RC | 453..1554 | 1..1084 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:00 Download gff for
FMO06541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5845495..5846030 | 568..1084 | 95 | | Plus |
| 3R | 5844552..5844703 | 1..153 | 97 | -> | Plus |
| 3R | 5845009..5845422 | 154..567 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:09 Download gff for
FMO06541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1670274..1670425 | 1..153 | 97 | -> | Plus |
| arm_3R | 1670731..1671144 | 154..567 | 100 | -> | Plus |
| arm_3R | 1671217..1671752 | 568..1084 | 95 | | Plus |
