FMO06542.5prime Sequence
1094 bp (945 high quality bases) assembled on 2008-09-24
> FMO06542.5prime
CAGTCGACATGCATTCGACCAAGTCAGCCGTTCTCCTGCTCGCCCTGGCC
ATCAGCGCCAGCTGCGTTGTTGCCACACCGCATCCGGAATTCTTGGATGA
AATCTTCGGCTCCATAAACCAAACTGGCCAGCACATCATCAGTGGATTCG
TGAATGCCACCAGGAATGGCACGGCCATTGCTGGTGAGTTCCTGGACAGC
ATAAGGAACTCCTCCGCCCAGTACACGCACGAAACCCTGGAGTTTGCCCA
AAAAATCGCAGATGCAGTTCATAGAGCCGCCACTGAGTCAATCGTCGACT
TTTCCGCGACTCTGAGGGCGCAGATCGACGCACTGCATCAGGGGATTGAT
CGGGTGAGAAACATCCTGCAGCGAGAGGCACTTAAGGATGCTCTCGCCAG
ACTGCAGACCGTCAATACCGTCGTAAATGATCTGGAAGTGGCCGTGAATA
ACCTCAATGATCGGATAGACGAGAAGAAACAAGAGTATTTCGCCATAATC
CAGAAGAAGTGGTACCAATGGTCTGACGCCCAATTGGAACGAGTGGATAA
GCTGACGAATGGAGTTGGCAACGAGGAAGCCGAGGAGATCATAAATGAGC
TACTCTCCCGGTATTCCGGATATCTGCACAGCTGCCTGGAGGAGTTGCAA
GCGCAGCAAGCCACGTTTGAGCAAAATGTCCAAGAGGCCATCGAAAAGTA
CCACAATGCCACCAACGAACTGACGGACCAAGTCGAGCTCTGCGTCCAGT
TCAACCTCAGCTTCCTGTCCTGCGCAATGCATCAATGAGGCACTACGCGG
ACTCGACTCGGCTCCCGCGGAGCTGCTCACCCTGAAGCTTCAGGCATCCG
ACTACTGGCCATCGGCCTGAATGCCAGCGGATGTGTGGGCCAGACCCTGG
CCGAGCACGAGCTGGAGAAGCCAGCGTGCGCGCAGCTGATGAGATCATTG
CGAGTACAGAGCACCGACTCCACGATGACGACTCTACCTCTAATATGAAC
GACCCCATAGTTCGCAGCTTTCTAGACATTCGTTGGCGCCGGGCCAGTAA
TGGTCTATTCATATTCAATCCTAAATCTTATCACAACTAGCCTA
FMO06542.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:48:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16826-RB | 1248 | CG16826-RB | 25..1047 | 9..1014 | 4645 | 98 | Plus |
| CG16826-RA | 1187 | CG16826-RA | 25..1047 | 9..1014 | 4645 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:48:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13347797..13348713 | 9..922 | 4435 | 99.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:48:15 has no hits.
FMO06542.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:54:35 Download gff for
FMO06542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16826-RA | 1..1032 | 5..1017 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:26 Download gff for
FMO06542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16826-RA | 1..1032 | 5..1017 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:19:01 Download gff for
FMO06542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16826-RA | 17..1050 | 1..1017 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:19:01 Download gff for
FMO06542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13347789..13348822 | 1..1017 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:54:35 Download gff for
FMO06542.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13347789..13348822 | 1..1017 | 97 | | Plus |
