FMO06544.5prime Sequence
512 bp (512 high quality bases) assembled on 2008-09-24
> FMO06544.5prime
ATAATACGAAGTTATCAGTCGACATGTGTTCCATACTCGCACGTGCAAGG
ATGTTTTGTGCAGGAATAGTGCAGCGTAGACTGAGCATGGGTCTCAATCC
AAAACTCGGCCTGGCGCCCAGGAAGCTCTACTCCGAGGAGAAGAAGCCCC
CGGGTGTTTTCCTTTGGGGCGGCGGACTTGGCAAGCTGCAGGGCGGTCTC
AAGGAGGAGGAGTACTTCATTTCGTTGACCCAAACCCTCGTGGGCAAGAT
GCGGGACAAGAAGGAGCCCGGCGACTACCTGCCCAACTGGGACGAGTTCC
AGAAGACTCTGGACCACGCCTCGCTGGGCAGCACCTCTTCCATGAACAAG
CACAAGAACGTACTCGAGGAGGCCTTTTTCCTGAACAAGACTGCAGACGA
CATCAAATTATTGCACGATCGTGCCCAAGAAGAGCTCAAATCTCGCCATA
CTGCCACAGAACTGGAACTCGAATCAGATCCCCAGAACACCAAAGCAAGC
TTTCTAGACCAT
FMO06544.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9875-RB | 730 | CG9875-RB | 96..566 | 24..494 | 2355 | 100 | Plus |
| CG9875-RA | 674 | CG9875-RA | 96..566 | 24..494 | 2355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23357893..23358178 | 104..389 | 1430 | 100 | Plus |
| 2R | 25286936 | 2R | 23358238..23358344 | 388..494 | 535 | 100 | Plus |
| 2R | 25286936 | 2R | 23357755..23357834 | 24..103 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:55:11 has no hits.
FMO06544.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:18:41 Download gff for
FMO06544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9875-RA | 92..571 | 19..502 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:29 Download gff for
FMO06544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9875-RA | 73..552 | 19..502 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:42:58 Download gff for
FMO06544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9875-RA | 92..571 | 19..502 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:42:58 Download gff for
FMO06544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23357893..23358178 | 104..389 | 100 | -> | Plus |
| 2R | 23358240..23358349 | 390..502 | 96 | | Plus |
| 2R | 23357747..23357834 | 16..103 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:18:41 Download gff for
FMO06544.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19245270..19245357 | 16..103 | 94 | -> | Plus |
| arm_2R | 19245416..19245701 | 104..389 | 100 | -> | Plus |
| arm_2R | 19245763..19245872 | 390..502 | 96 | | Plus |
