FMO06552.5prime Sequence
731 bp (731 high quality bases) assembled on 2008-09-24
> FMO06552.5prime
CAGTCGACATGTCGAACTTCGTGAACTTGGACATCTTCTCCAACTACCAA
AAGTACATAGACAATGAACAGGAAGTCAGGGAGAACATTCGCATTGTGGT
GCGCGAAATCGAGCATTTGTCAAAGGAAGCGCAGATTAAACTGCAGATTA
TTCATAGCGATTTGAGCCAGATTAGTGCCGCCTGCGGCTTAGCCCGCAAA
CAGGTTGAGCTGTGTGCCCAAAAGTACCAGAAATTGGCCGAACTGGTGCC
AGCTGGGCAGTACTACAGATACTCCGATCACTGGACCTTCATTACGCAGC
GTTTGATCTTCATCATTGCCTTGGTTATTTACCTGGAGGCGGGCTTCTTG
GTCACCCGCGAAACAGTGGCCGAAATGCTGGGATTGAAGATCAGCCAGTC
TGAGGGCTTCCATCTGGATGTGGAGGACTATCTACTGGGCATACTGCAGT
TGGCGTCGGAGCTCTCCCGATTCGCTACCAATTCCGTCACCATGGGCGAC
TACGAGCGTCCCCTGAATATCTCCCATTTTATTGGTGACCTGAACACGGG
CTTCCGTCTGCTGAACCTGAAGAACGATGGCTTGCGAAAGCGCTTCGATG
CCTTAAAGTATGATGTCAAGAAGATCGAGGAGGTCGTCTACGATGTCAGC
ATACGCGGTCTGTCCAGCAAGGAAAAGGACCAGCAGGAGGAGCCGGCTGT
TCCTGCAACCGAAGCAAGCTTTCTAGACCAT
FMO06552.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:57:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trsn-RA | 864 | CG11761-RA | 74..778 | 9..713 | 3510 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:57:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10479097..10479425 | 713..385 | 1645 | 100 | Minus |
| 2R | 25286936 | 2R | 10479482..10479600 | 384..266 | 595 | 100 | Minus |
| 2R | 25286936 | 2R | 10479660..10479756 | 268..172 | 485 | 100 | Minus |
| 2R | 25286936 | 2R | 10479823..10479912 | 171..82 | 435 | 98.9 | Minus |
| 2R | 25286936 | 2R | 10479964..10480038 | 83..9 | 375 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:57:38 has no hits.
FMO06552.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:28:11 Download gff for
FMO06552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trsn-RA | 67..784 | 2..722 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:37 Download gff for
FMO06552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trsn-RA | 63..780 | 2..722 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:02 Download gff for
FMO06552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trsn-RA | 67..784 | 2..722 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:02 Download gff for
FMO06552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10479091..10479425 | 385..722 | 98 | <- | Minus |
| 2R | 10479482..10479597 | 269..384 | 100 | <- | Minus |
| 2R | 10479660..10479756 | 172..268 | 100 | <- | Minus |
| 2R | 10479823..10479910 | 84..171 | 98 | <- | Minus |
| 2R | 10479964..10480045 | 2..83 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:28:11 Download gff for
FMO06552.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6366596..6366930 | 385..722 | 98 | <- | Minus |
| arm_2R | 6366987..6367102 | 269..384 | 100 | <- | Minus |
| arm_2R | 6367165..6367261 | 172..268 | 100 | <- | Minus |
| arm_2R | 6367328..6367415 | 84..171 | 98 | <- | Minus |
| arm_2R | 6367469..6367550 | 2..83 | 95 | | Minus |
