FMO06553.5prime Sequence
768 bp (768 high quality bases) assembled on 2008-09-24
> FMO06553.5prime
CAGTCGACATGACGGAGCTGCTGATTGATCCGGACATCCGCGTGTGGGTG
TTCCTGCCCATCGTGCTGATCACGTTCCTGGTGGGCATTGTGCGCCACTA
CGTCTCTATACTGATATCCACGCAGAAGAAGGCCGAGATCACCCAAATCC
AGGACAGCCAGGCAATGATCCGGGCACGCTTGCTACGCGAGAACGGCAAG
TATCTCAGCGCCCAGAGCTTCTCCATGCGTAAGAACTACTTCAACAACGA
GGAGACCGGCTACTTCAAGACTCAGAAACGGGCGCCTGTAGCCCAAAACT
CATCCGCCATGCTCACCGACATGGTCAAGGGAAACTTTATTAACGTGCTG
CCCATGGTCGTGATCGGTGGCTGGATCAACTGGATGTTTTCGGGCTTCGT
CACCACCAAGGTACCCTTCCCGTTGACCCTGCGCTTTAAGCCCATGCTCC
AGCGGGGCGTGGAGCTGGCCTCGCTGGACGCCGCCTGGGTCTCCTCAGCC
TCTTGGTACTTCCTCAACGTGTTCGGCCTGCGCTCCATCTACACACTGGT
TCTTGGCGAGAACAATCATGCCGATCAGACGCAGGCACAGGCGGATGCCA
TGACGGGCGCCGCCATGACTATGCCCCAGGATCCAAAGGCCGCCTTCAAG
GCCGAGTGGGGAGGCGCTCGAGATAACCGAGTACCACAACGCACTCAAGA
ACATTGACGCTGACATGCTGGCTATCGCCAGTGCACCCGCGGCATCATCC
GCAAGCTTTCTAGACCAT
FMO06553.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:15:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6750-RA | 964 | CG6750-RA | 90..830 | 9..750 | 3685 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:15:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10731534..10732129 | 750..154 | 2935 | 99.8 | Minus |
| 2L | 23513712 | 2L | 10732186..10732334 | 157..9 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:15:03 has no hits.
FMO06553.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:59:07 Download gff for
FMO06553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6750-RA | 90..835 | 9..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-24 09:37:38 Download gff for
FMO06553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6750-RA | 73..818 | 9..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:19 Download gff for
FMO06553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6750-RA | 90..835 | 9..758 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:19 Download gff for
FMO06553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10731529..10732125 | 158..758 | 99 | <- | Minus |
| 2L | 10732186..10732334 | 9..157 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:59:07 Download gff for
FMO06553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10731529..10732125 | 158..758 | 99 | <- | Minus |
| arm_2L | 10732186..10732334 | 9..157 | 100 | | Minus |
